Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0015 ATGGGCTGCAACAACTCAACACTGGACCGCCTTCCAGCTGTAGCTCTATGCCGTGACCGTTGCAAGTTTGTAGACGAAGCTCTCCGTCAAAGCTACGCTGTGGCAGATACACAGGCCACACACATGCACTCCCTCAACACTCTTGGCCCCACTTTCTCCCGTTTCTTCCATCATTTTGAATCTCAAGTTGAGGCTGAAGTTGATCCCAACTGCAACTCACACCTCCCTCCGCATTCAGAAACACAAACAGAAGCCGACGAAAAGGAATCCTCCCAATTTTTCAACCCAACTCGTTATGACTCATCACCTTCACCTTCACCTTCACCTCCTCATTATCATTATGCGCCCTCACCGCCACCTCCCACCACCTCACCCTGGGACTTCTTGAACGTTTTTGAAAACTATGACAAATACCAAGTACCTTACAGCCCCAGGCGTGACCGTGACAACgaggagaagaaaaagcaaAGTAATTCTGATTCTCTTGCCCAGAAAGAGGCCAAGGAACCTAGCAGCAACTCGGCCTCGCCCAAAGCTTTATCAGATGCAATGAAAGAGATTCAGATTCTATTTCAGAGAGCATCCAATTCCGGCTACCTAATTTTGGAAATGCTCGACGTTGGCAAACTCCGTTATCATCCTAATAATCCAGTTCCTTGCAAGATGATGCACGCCTTCACTCCCTCAAAGCACCTTAACTGCATGGAATCCTCCACAAAGTATCAAGCAGTTGACATAAACAAGGGCCTCAGCTATGGGAATCTTTGCTCTACTCTTAACAAGCTGTGTATGTGGGAGAAGAAGCTTTATGTTGAAGTCAAGGCTGGGGAGAAATTGCGCGTACTTCACGAGAAGAAGTGCAGGCAGTTGAAACGGATGAATAAAAAGGGTGCCGATGCTCACAAAGTTGATTCTGTTGAAACTTTAATTGGGATTCTAgccacaaaaatcaaaatttctttcCAAGTGGTTGACAACATATCTAGCACTATATGTAAGTTGATGGAAGAGGAGTTATGGCCGCAGATCAACAAGTTCATTTTCAGGTTTCTTGGAATGTGGAAAGAAATGCTAGAATGTTACAGATGCCAGTATAAGGAAATTGCTGAAGCCAAAAGTCTAGATGCCTCTTGGTTTAGCAGGAAGTCTGGTAATTCTCATCTTGATGAATTAATAAAACTCAAATCTGAGGTACAGAACTGGAATTTAAGTCTCTCAGATTGGATTTACGCCCAAAAGGCCCATGTGAAAGCCTTGAATGGTTGGCTAGTAAGATGTCTACCGTATGAACCTGAAGAAATACTTGATGGTACAGCTCCCTTCTCTCCTGCCAGGATTGGTGCACCGCCTGTGTTTGTGATCTGTACCAAATGGTCACGGGCAATGGATATTCTCTCAGAGAAGGATGTCACTGAAGCTGTTAATGGATTTCTGCTCAAAGTGAATGAGCTCATGGAAAAGCATATTTCAGATCTTCAGCAAAAATTAACATTGGACAAGGAATTGGAGAGAAAAGTGAAAATCTTGGAGAGGGAGGAGCAAAAGATGCACAAAGTGGTTCAGGCTCGAGAAAAAAAGATGATTCCAATTGCCAGAGAAAATAATGATGTCTTGTTACGAGGGGATGCCGTGCATCATGGTAATCTTGTTGATATAATGAGCTTGCAGTCAGGTCTAAAACATATCTTTGCTGCCGTGGAGAGGTTCACTGCTACCATCGCTTGTGTATATGAAGAATTGTGCCAGCAAATTGAGGAAGACAACCATGTTTTGTGA 1776 0.4319 MGCNNSTLDRLPAVALCRDRCKFVDEALRQSYAVADTQATHMHSLNTLGPTFSRFFHHFESQVEAEVDPNCNSHLPPHSETQTEADEKESSQFFNPTRYDSSPSPSPSPPHYHYAPSPPPPTTSPWDFLNVFENYDKYQVPYSPRRDRDNEEKKKQSNSDSLAQKEAKEPSSNSASPKALSDAMKEIQILFQRASNSGYLILEMLDVGKLRYHPNNPVPCKMMHAFTPSKHLNCMESSTKYQAVDINKGLSYGNLCSTLNKLCMWEKKLYVEVKAGEKLRVLHEKKCRQLKRMNKKGADAHKVDSVETLIGILATKIKISFQVVDNISSTICKLMEEELWPQINKFIFRFLGMWKEMLECYRCQYKEIAEAKSLDASWFSRKSGNSHLDELIKLKSEVQNWNLSLSDWIYAQKAHVKALNGWLVRCLPYEPEEILDGTAPFSPARIGAPPVFVICTKWSRAMDILSEKDVTEAVNGFLLKVNELMEKHISDLQQKLTLDKELERKVKILEREEQKMHKVVQAREKKMIPIARENNDVLLRGDAVHHGNLVDIMSLQSGLKHIFAAVERFTATIACVYEELCQQIEEDNHVL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0015 591 Pfam Protein of unknown function (DUF630) 1 57 IPR006868 -
Ssu5g0015 591 PANTHER UNCHARACTERIZED 1 84 - -
Ssu5g0015 591 PANTHER UNCHARACTERIZED 152 586 - -
Ssu5g0015 591 Coils Coil 492 512 - -
Ssu5g0015 591 Pfam Protein of unknown function (DUF632) 180 482 IPR006867 -
Ssu5g0015 591 MobiDBLite consensus disorder prediction 67 120 - -
Ssu5g0015 591 PANTHER F5M15.15 1 84 - -
Ssu5g0015 591 MobiDBLite consensus disorder prediction 141 179 - -
Ssu5g0015 591 PANTHER F5M15.15 152 586 - -
Ssu5g0015 591 PANTHER F5M15.15 111 163 - -
Ssu5g0015 591 MobiDBLite consensus disorder prediction 163 179 - -
Ssu5g0015 591 MobiDBLite consensus disorder prediction 141 162 - -
Ssu5g0015 591 PANTHER UNCHARACTERIZED 111 163 - -
Ssu5g0015 591 MobiDBLite consensus disorder prediction 102 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0015 Ssu-Chr5 220924 223196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0015 128 488 Acyl Lipid Metabolism Gene Families AT2G27090 25.057 3.65e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0015 - - gmx:100787793 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0015 5 220924 223196 Ssu5g0015 5 220924 223196 ECH