Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0006 ATGCACTGGAGCGAGAACGAAGGGATAGATGGGAAGGCCTTCGTGGTCACGGGTGGACTGGGATTCGTAGGATCTGCTCTGTGCTTGGAGCTCATCCGAAGAGGAGCTAGAGAGGTGCGAGTTTTTGACCTCCGCCCCTCTTCTCCTTGGTCGAGTCTTCTCAAGGATAAGGGAGTCCTCTGCATCCAAGGGGATGTTGCCCGCAAAGAAGACGTGGAAAGGGCCCTCCGCGGTGCCGACTGTGTATTCCACCTTGCGGCCTTTGGAATGTCAGGTAAAGAGATGCTCCAATTTGGTCGTGTTGATGAAGTCAACATAAATGGGACTTGCCGTGTTTTGGACGCTTGCCTCGACCTCGGCATCAAAAGGCTTGTCTACTGTAGCACTTACAATGTTGTCTTTGGCGGTCAGCAGATCATCAACGGGAATGAGACCATTGCCTTATTTCCCAATTGA 456 0.5219 MHWSENEGIDGKAFVVTGGLGFVGSALCLELIRRGAREVRVFDLRPSSPWSSLLKDKGVLCIQGDVARKEDVERALRGADCVFHLAAFGMSGKEMLQFGRVDEVNINGTCRVLDACLDLGIKRLVYCSTYNVVFGGQQIINGNETIALFPN 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0006 151 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 42E MEMBER 1 9 150 - -
Ssu5g0006 151 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 144 IPR036291 -
Ssu5g0006 151 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 15 148 IPR002225 GO:0003854|GO:0006694|GO:0016616
Ssu5g0006 151 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 150 - -
Ssu5g0006 151 Gene3D - 4 151 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g0006 1 150 Lipid Metabolism Gene Families AT2G33630 71.333 2.81e-74 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0006 - - gmx:100808827 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0006 5 90576 91144 Ssu5g0006 5 90576 91144 ECH