Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3588 ATGACGGGGTCTGAAGGCCCAAGCTACACGGTAGATGATGCTCTTGTGGCTTTGGGTTTTGGAAATTTCCAAATTCTCGTGCTTGCTTATGCTGGCGTTGGTTGGGTTTCAGAAGCAATGGAAATGATGCTACTCTCTTTTGTAGGCCCTGCAGTTCAAACTGCATGGAGTCTTTCCCCTCATGAAGAGAGTTTGATAACTAGTGTGGTTTTTGCTGGCATGCTAATCGGGGCATACTCATGGGGCATTGTTTCAGATAAACATGGAAGGAGGAAGGGATTCCTTATCACAGCGACAGTTACTGCTATGGCTGGTTTTCTTAGTGCATTTGCTcctaactatttattattaattgtccTTCGTTCTGTGGTTGGTATTGGTTTGGGAGGTGGCCCTGTATTATCATCTTGGTTTCTAGAGTTTGTTCCTGCCCCCAATAGAGGTACCTGGATGGTTGTCTTTTCGGCATTTTGGACTCTTGGTACAATTTTTGAGGCCTCACTTGCATGGATTGTGATGCCAAAACTTGGTTGGAGATGGCTTCTTGCACTGTCTTCTCTTCCCACGTCTTTCCTTCTTCTGTTCTACAAAGTGACTCCTGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAGCTGATGCAATTAATGTTTTGGAGAAAATAGCAAGAGTAAATGGCAGAGAACTTCCTTCCGGTATCCTTGTTTCTGACCATGAAATCGAGCTACACAAAATTGATAACCCTTCAGAGGATGCTTCCTTGCTCTCACCAAGAACAAATGAAGTTGAACATCCTAAAGGAATAGTTTCCAATTTAGGTGGTATCTCATCGTTGTTAGTGCTTCTCTCACCAAAATTGGCAAGGTCAACCCTTCTATTATGGGCTGTGTTCTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACCACTGAGTTGAACGGACATAGTAAATGCATGTCACATAAATTGCAGACAGAGAAGTCCCAGGATGTTAGATACAAGAGTGTTTTTATTGCTAGTTTTGCAGAGCTACCTGGGCTCCTCTTGTCAGCTGCGGCAGTAGATAAACTCGGTCGTAAGCTCTCAATGTCAACCATGTTCTTCATATGCTGTATTTTCCTTCTCCCATTAATATTCTATCTGCCTGAAGGCCTAACGACGAGCCTTTTATTTCTAGCTCGCATATGCATCACAGCAACCTTCacaattgtgtatatatatgcaccagagATGTACCCAACATCAGTTAGAACAACTGGTGTGGGAATTGCAAGTTCGGTGGGGAGAATTGGTGGAATGATATGCCCTTTGGTAGCCGTGGGTTTAGTACATGGATGTCATCAAACTGCAGCTGTCCTTCTGTTTGAGATCGTAGCTCTTCTTTCGGGAATATGTGTCATGTTCTTCCCGGTTGAGACCATGGGCCAAGAACTGCGAGATAGTGTGCAAGTCTAA 1464 0.4228 MTGSEGPSYTVDDALVALGFGNFQILVLAYAGVGWVSEAMEMMLLSFVGPAVQTAWSLSPHEESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTAMAGFLSAFAPNYLLLIVLRSVVGIGLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAWIVMPKLGWRWLLALSSLPTSFLLLFYKVTPESPRYLCLKGRTADAINVLEKIARVNGRELPSGILVSDHEIELHKIDNPSEDASLLSPRTNEVEHPKGIVSNLGGISSLLVLLSPKLARSTLLLWAVFFGNAFSYYGLVLLTTELNGHSKCMSHKLQTEKSQDVRYKSVFIASFAELPGLLLSAAAVDKLGRKLSMSTMFFICCIFLLPLIFYLPEGLTTSLLFLARICITATFTIVYIYAPEMYPTSVRTTGVGIASSVGRIGGMICPLVAVGLVHGCHQTAAVLLFEIVALLSGICVMFFPVETMGQELRDSVQV 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3588 487 Gene3D MFS general substrate transporter like domains 21 486 IPR036259 -
Ssu4g3588 487 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 5 486 - -
Ssu4g3588 487 ProSitePatterns Sugar transport proteins signature 1. 353 368 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu4g3588 487 ProSiteProfiles Major facilitator superfamily (MFS) profile. 27 477 IPR020846 GO:0022857
Ssu4g3588 487 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER-LIKE, MAJOR FACILITATOR SUPERFAMILY DOMAIN PROTEIN-RELATED 5 486 - -
Ssu4g3588 487 SUPERFAMILY MFS general substrate transporter 13 482 IPR036259 -
Ssu4g3588 487 Pfam Sugar (and other) transporter 63 225 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu4g3588 487 Pfam Sugar (and other) transporter 351 482 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3588 Ssu-Chr4 87081410 87084974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3588 49 485 Organic Solute Cotransporters AT3G20660 26.667 2.69e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3588 - - gmx:100786568 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3588 4 87081410 87084974 Ssu4g3588 4 87081410 87084974 ECH