Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3587 ATGGCGGCAACCCAACCACCGCAGGGTCCGGATCGTACCACCGAAGAGATACCAGCCGAACCCGATAACATGAAGGAGCAGGGTACAGCAACTATAGGTCATTCAAGGGAGACCACAAGTCAATCAGGATCTTTAGGTTCAGGTGGAGATTGTCCTCTGTATCCTCCTAATGTGTATGCTCCCCAGGCCCAGGCTTTCTACTATAGAGGTTTCGACAATGGCAATGGTGAATGGGATGAATATTCTTCATATGTCAATTCTGAGGGATTAGAGATTGGATCTCCTggcgTCTACAATGAAAATCCATCTCTTATTTTCCATTCTGGATATGGCTTCAACCCACAAATGCCTTATGGACCATATTCCCCTGTTACCACACCTTTGCCTTCTGTTGGTGGAGACACACAGTTATACTCCCCTCAGCAATTTCCATACACTGGGCCACCTTATTATCATCAGTTGGTTCCTCCTAGCTTATCATATCTTAATTCACCTACTCCAGTTTCGCAGCCAGAGCTCACCAACCTGGTAGGTATTGACCAACAAGTTGATAACATGTTTTTTGGACCAAGAGCGGGTTATCCATCAGTGGGATCTTTTGGTAGAGGCTTTCCTGTAGCACCTGGTTCCTTTGGCTTTCATGAATCCCAACAAGGATTTGAAGGATCAAGATCTTGTGGAATCTGGTCAGATTGCTCAAAACCCTCGGAAAGTCAGAGATCTTTGATGCCTCTATCGCCATCTGTTTCTCCACAGCCAATGGGCTCACTTGGGTCATTTGGGCCTAGTGTTGGAATGGCTTCTCATCAACAGCAATCATTGTATGGCTTTGGATCTGGTTCAAACTCCTATGGTAGAGGCTACCTGCCTAACCAGGGTTCTAGCTTTGGAGGCGCTTCCATTGCCAATCTTAATGCTAATGATAGGAGTTATGCTTCTCTTGAAAATAGCAGGCGGCAAGGGAGGCCACCTGCATCTCTTTGCAATTGTAATGGTACTCTTGATATCCTTAGTGAGCAGAACCGAGGACCAAGGGCCTCAAagatgaaaaatcaaattttggctGAAAATAATTCTGTggataatagtaaaaatagtgCATCTACTGCCAAGTTCCAAAATGAATCATTCAATCGGTCAGATTTTGCCACAGATTACCAGGATGCCAAATTTTTTGTCATCAAATCTTATAGTGAGGATAATGTTCACAAGAGCATTAAATATGGTGTCTGGGCTAGTACACCAAATGGAAACAGAAAGTTAGATGCTGCATATCGCCAAGCAATGGAGAAGCAAGATGCCTGtcctatatttctctttttttcgGTAAATGCTAGTGCTCAGTTCTGTGGGGTAGCTGAAATGGTTGGACCTGTCAATTTTGACAAGAGTGTGGACTTTTGGCAGCAAGATAAGTGGAGTGGGCAGTTTCCTGTGAAGTGGCACATAATTAAAGATGTTCCGAACAGTCAGTTTCGTCACATTGTTCTtgaaaataatgataacaaGCCTGTGACTAACAGTCGAGATACTCAGGAGGTGAAGTTGCCACAGGGGATTGAAATGttgaccatttttaaaaattatgaaactgaTGTGTCCATCCTGGATGATTTTGATTTCTATGAAAACCGGCAGAAGGCTATGCAAGAACGGAAGGCAAGGCAGCAAAGCAGCATGATGGCTACTGCATTAGTTGGAGAAAATGAACATAGGAGTTCTGCTAACACTACTGGTGATTTCATGAAGCAGATGTCAAAGAGCTTTGCTCTAGTTGTCCGCTTAGATGAGAAGAACAACGAAGTCGTTGCTGCGGATAGAGATAGTTTAGTCTCTCACGGCTCGATTGGTAATGTAGTTAAACCTGATGATGGTCAATCAGTGACTGCCTCTTCAACTCAAACCAGTTAG 1911 0.4202 MAATQPPQGPDRTTEEIPAEPDNMKEQGTATIGHSRETTSQSGSLGSGGDCPLYPPNVYAPQAQAFYYRGFDNGNGEWDEYSSYVNSEGLEIGSPGVYNENPSLIFHSGYGFNPQMPYGPYSPVTTPLPSVGGDTQLYSPQQFPYTGPPYYHQLVPPSLSYLNSPTPVSQPELTNLVGIDQQVDNMFFGPRAGYPSVGSFGRGFPVAPGSFGFHESQQGFEGSRSCGIWSDCSKPSESQRSLMPLSPSVSPQPMGSLGSFGPSVGMASHQQQSLYGFGSGSNSYGRGYLPNQGSSFGGASIANLNANDRSYASLENSRRQGRPPASLCNCNGTLDILSEQNRGPRASKMKNQILAENNSVDNSKNSASTAKFQNESFNRSDFATDYQDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYRQAMEKQDACPIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLPQGIEMLTIFKNYETDVSILDDFDFYENRQKAMQERKARQQSSMMATALVGENEHRSSANTTGDFMKQMSKSFALVVRLDEKNNEVVAADRDSLVSHGSIGNVVKPDDGQSVTASSTQTS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3587 636 Pfam YT521-B-like domain 389 527 IPR007275 GO:0003723
Ssu4g3587 636 MobiDBLite consensus disorder prediction 237 265 - -
Ssu4g3587 636 MobiDBLite consensus disorder prediction 622 636 - -
Ssu4g3587 636 PANTHER EVOLUTIONARILY CONSERVED C-TERMINAL REGION 5 13 620 - -
Ssu4g3587 636 Gene3D ph1033 like domains 364 541 - -
Ssu4g3587 636 MobiDBLite consensus disorder prediction 613 636 - -
Ssu4g3587 636 MobiDBLite consensus disorder prediction 1 49 - -
Ssu4g3587 636 MobiDBLite consensus disorder prediction 28 47 - -
Ssu4g3587 636 ProSiteProfiles YTH domain profile. 389 526 IPR007275 GO:0003723
Ssu4g3587 636 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 13 620 IPR045168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3587 Ssu-Chr4 87021962 87032285 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3587 K20102 - gmx:100816860 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3587 4 87021962 87032285 Ssu4g3587 4 87021962 87032285 ECH