Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3580 ATGACTATGTGGACTACAAATATAAATCCAATGCCAATCAGAAGCAGCGGTTTGTTTTGGTTTCAAATAAATTGCTCGGATTCAAAGCAAGGGCGTGGTTTTGGAGAAAACAGGATTAAGACGAACAAATATGACAAGGGTTTGGCGTCGCAGCAAAGCAAGGGATCAACAGCTAAACAGTCTCGCCCTCTATCTTCTCAGGCACCCCGTTTAAGTTCACAAGTTGACGGCAAATCTAGGAACGATTTTTTGGATGTTGACTTTGAGGAACGGCTAAAATCAGTTAGAAGGTCAGCACTTGAGCAGAAGAAGGCGGAGGGGGAAAAAGAATTTGGAGCAATTGACTATGACGCACCAATTTCTTCGGACAATAAGACAATTGGCTTCGGTACTAAGATTGGAGTAGGGGTAGCTGTTGTAATCTTCGGTCTGGTTTTTGCTTTCGGAGATTTTCTTCCATCAGGAAGTGTTAGTCCCACTGAAGACAATGTTGTGGTCAATCGTAAGTTGTCTGAGGAGGATAAAGCTACTCTTCAGAGTAGGCTCAAGGAATTTGAAGCAACATTAAGTAATTCCCCACGAGATCCAACTGCTCTTGAGgGAGCTGCAGTAACTTTGGCTGAGCTAGGGGAATATACAAGAGCTGCTTCTCTACTTGATGATTTGACAAAGGAAAAACCAAATGATGCTGATGTTTTTCGTTTGCTTGGAGAAGTTAAGTACGAACTCAAAGATTATGAAGGAAGTATTGCTGCATATAAAAGCTCAGCAAGGGTGTCCAAAGATATCCAATTTGAAGTTCTCCGTGGCCTTTCCAATTCATTACTTGCTGCTAAAAAGCCAGAGGAGGCTGTTCAATTGCTTTTGGCATATCGTGAGCATCTGAGTTCGGAAAACTTAAGCAAAAAATCTGATAGCAACCCAACAGACTCACAGAAGCTGGATCCCGTCCAAGTTGAATTGCTTCTAGGGAAAGCGTACTCAGATTGGGGACATGTCAGTGATGCTGTAGCTGTTTATGATCAGCTCATATCTACTCACCCTGATGATTTTCGTGGATACTTAGCCAAGGGAATCAtcctaaaagaaaacaaaaatattggtGATGCAGAAAGGATGTTCATACAAGCTAGGTTCTTTGCACCAGATCAAGCCAAAGCACTTGTGGACCGTTATTCAAGATGA 1185 0.416 MTMWTTNINPMPIRSSGLFWFQINCSDSKQGRGFGENRIKTNKYDKGLASQQSKGSTAKQSRPLSSQAPRLSSQVDGKSRNDFLDVDFEERLKSVRRSALEQKKAEGEKEFGAIDYDAPISSDNKTIGFGTKIGVGVAVVIFGLVFAFGDFLPSGSVSPTEDNVVVNRKLSEEDKATLQSRLKEFEATLSNSPRDPTALEGAAVTLAELGEYTRAASLLDDLTKEKPNDADVFRLLGEVKYELKDYEGSIAAYKSSARVSKDIQFEVLRGLSNSLLAAKKPEEAVQLLLAYREHLSSENLSKKSDSNPTDSQKLDPVQVELLLGKAYSDWGHVSDAVAVYDQLISTHPDDFRGYLAKGIILKENKNIGDAERMFIQARFFAPDQAKALVDRYSR 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3580 394 ProSiteProfiles TPR repeat profile. 317 350 IPR019734 GO:0005515
Ssu4g3580 394 Coils Coil 168 188 - -
Ssu4g3580 394 Gene3D Tetratricopeptide repeat domain 164 392 IPR011990 GO:0005515
Ssu4g3580 394 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 14 394 - -
Ssu4g3580 394 MobiDBLite consensus disorder prediction 31 78 - -
Ssu4g3580 394 SUPERFAMILY TPR-like 193 387 IPR011990 GO:0005515
Ssu4g3580 394 MobiDBLite consensus disorder prediction 44 78 - -
Ssu4g3580 394 SMART tpr_5 351 384 IPR019734 GO:0005515
Ssu4g3580 394 SMART tpr_5 317 350 IPR019734 GO:0005515
Ssu4g3580 394 SMART tpr_5 196 229 IPR019734 GO:0005515
Ssu4g3580 394 SMART tpr_5 230 263 IPR019734 GO:0005515
Ssu4g3580 394 Pfam Tetratricopeptide repeat 182 237 - -
Ssu4g3580 394 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 14 394 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3580 - - gmx:100790462 670.618