Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3577 ATGTTAGGTGTCTTGAAGgTAGCAGCAAAGACTGTTTGCTTCATCTTTTCTACGCCAGATAAAATTCTCACTCCAGAGTCCAGAGCATCTCAACATAGAAGCCTAAGCAGAGTGGTATGCTTGATGGATTCAAAGAAGTCTAACAAGATCAGAGAGGTGGTTAGGCTTCAACAAATCCTCAAGAAGTGGAAGAAAGTTGCAGCTGCTTCCAGCAACAGCTCTGCCTCCTCTTCTGCCAGCAGTAAAGGCATCAAGTTTTTAAAACGAACCCTCTCATTCACAGATGTTTCTTCTTCCAACAATGACATCGTTCCAAAAGGCTTCCTCGCTGTTTGTGTAGGGAAAGAGCTCAAGAGATTCGTTATTCCCACGGATTACTTGAGACACGAAGCATTTGAGATGTTGCTCCAAGAAGCCGAAGAGGAGTTTGGTTTCCAGCAAGAGGGCGTGCTCAAAATCCCATGCCAAGTATCagtgtttgagaaaatattgaaGGCGGTGGAAGACAACAAAGAAGCCTTAGCCTTGCATGAGTTTGGGTCCAatggagagaagaagaagaagaaggacaAGATTAGTTGTTACGCATCAGATTGTGAAGTTACTCCCCCTCATCATGCTCAAACGTGTACATAG 636 0.4135 MLGVLKVAAKTVCFIFSTPDKILTPESRASQHRSLSRVVCLMDSKKSNKIREVVRLQQILKKWKKVAAASSNSSASSSASSKGIKFLKRTLSFTDVSSSNNDIVPKGFLAVCVGKELKRFVIPTDYLRHEAFEMLLQEAEEEFGFQQEGVLKIPCQVSVFEKILKAVEDNKEALALHEFGSNGEKKKKKDKISCYASDCEVTPPHHAQTCT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3577 211 PANTHER OSJNBA0060N03.10 PROTEIN 46 207 - -
Ssu4g3577 211 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 46 207 IPR003676 GO:0009733
Ssu4g3577 211 Pfam Auxin responsive protein 61 166 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3577 Ssu-Chr4 86819054 86822219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3577 42 210 Calmodulin-binding Proteins AT2G24400 54.396 7.57e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3577 K14488 - gmx:100782489 229.95