Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3576 ATGTCGTCGTCGAAGACAAAaaccccttcttcttcttcactctCACTCTGGAGCTCCCAGCCTCAGGAAGGTAACATGGCATCGGAATCCCAATCGCAGAAGAACAAGTATGGGCACGGAGTGTTTGGAGACGTGTACAGCATCATCAAAGAGACGGAGATTGATCATCATAACCCTAcctttgattttcaatttcagCTTCCCCCTGTTACTaattttttggGCTCTAGAGAGGTTCGCGAGTTTATCAGTGGTGCCCTTGCAGGGGCAATGACAAAGGCTATACTTGCTCCTCTTGAGACCATCAGGACAAGAATGGTAGTTGGTGTTGGGTCAAAAAATATTGCCGGTAGCTTCATTCAGGTTATAGAGCAGCAGGGATGGCAAGGATTGTGGGCTGGAAACATGATCAATATGCTTCGTATAATTCCAACACAGGCCATTGAGCTAGGCACATTTGAGTGTGTGAAACGGGCAATGATATCAGTGCAAGAGAAATGGAAAGAGAATGAATACCCCAATTTGCAGATAGGTTGCATCAATTTGAACTTATCTTTATCTTGGATTTCGCCGGTTGCCGTGGCTGGTGCAGCTGCAGGAGTTGCTAGCACACTTGCGTGCCATCCCCTGGAAGTTTTGAAGGACCGGTTAACTGTAAGTCCTGAAGCCTACCCTAATTTAGGTATTGcgattagaaatatttataaagatggTGGTGTTGGCGCTTTTTATGCTGGTATCTCACCAACTCTAATTGGCATGCTTCCATACAGTACATGTTATTATTTCATGTATGATACAATGAAGACATCTTACTGCCAGACCAGAAATAAGAAATCTCTAACTCGTCCAGAGATGCTTTTAATTGGAGCTCTAGCAGGTTTTACTGCCAGTACAATTAGCTTCCCATTGGAGGTGGCTAGGAAGCGCCTGATGGTGGGTGCTTTGCAAGGTAAGTGCCCACCAAACATGGCAGCAGCACTTTCAGAAGTTATTAGAGAAGAAGGTCTGAAGGGTCTCTACAGAGGATGGAGTGCAAGCTGTTTAAAGGTCATGCCATCCTCTGGCATCACCTGGATGTTTTATGAAGCATGGAAAGACATATTGCTTGTCCAGAATTGTAATTCCTTTTAG 1134 0.4233 MSSSKTKTPSSSSLSLWSSQPQEGNMASESQSQKNKYGHGVFGDVYSIIKETEIDHHNPTFDFQFQLPPVTNFLGSREVREFISGALAGAMTKAILAPLETIRTRMVVGVGSKNIAGSFIQVIEQQGWQGLWAGNMINMLRIIPTQAIELGTFECVKRAMISVQEKWKENEYPNLQIGCINLNLSLSWISPVAVAGAAAGVASTLACHPLEVLKDRLTVSPEAYPNLGIAIRNIYKDGGVGAFYAGISPTLIGMLPYSTCYYFMYDTMKTSYCQTRNKKSLTRPEMLLIGALAGFTASTISFPLEVARKRLMVGALQGKCPPNMAAALSEVIREEGLKGLYRGWSASCLKVMPSSGITWMFYEAWKDILLVQNCNSF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3576 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 187 271 IPR018108 -
Ssu4g3576 377 MobiDBLite consensus disorder prediction 1 35 - -
Ssu4g3576 377 Pfam Mitochondrial carrier protein 79 161 IPR018108 -
Ssu4g3576 377 Pfam Mitochondrial carrier protein 193 272 IPR018108 -
Ssu4g3576 377 Pfam Mitochondrial carrier protein 285 370 IPR018108 -
Ssu4g3576 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 76 159 IPR018108 -
Ssu4g3576 377 PANTHER SOLUTE CARRIER FAMILY 25 39 373 - -
Ssu4g3576 377 SUPERFAMILY Mitochondrial carrier 79 363 IPR023395 -
Ssu4g3576 377 PRINTS Mitochondrial carrier protein signature 81 94 IPR002067 GO:0055085
Ssu4g3576 377 PRINTS Mitochondrial carrier protein signature 94 108 IPR002067 GO:0055085
Ssu4g3576 377 PRINTS Mitochondrial carrier protein signature 290 312 IPR002067 GO:0055085
Ssu4g3576 377 PRINTS Mitochondrial carrier protein signature 244 262 IPR002067 GO:0055085
Ssu4g3576 377 PRINTS Mitochondrial carrier protein signature 134 154 IPR002067 GO:0055085
Ssu4g3576 377 ProSiteProfiles Solute carrier (Solcar) repeat profile. 281 368 IPR018108 -
Ssu4g3576 377 PANTHER MITOCHONDRIAL ADENINE NUCLEOTIDE TRANSPORTER BTL1-RELATED 39 373 - -
Ssu4g3576 377 Gene3D Mitochondrial carrier domain 75 373 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3576 Ssu-Chr4 86812689 86815146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3576 53 375 Organic Solute Cotransporters AT3G20240 71.207 1.01e-175 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3576 - - gmx:100777341 650.203