Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3574 ATGGAGTTTTTGAAAATCAAGAAGTTCAGAAAATCTCAGAAAGCAGACGGAGAAAAGGATTTGGCAGACAAGGCAGTGCCGGTGCCTGAGGAACCAAAGCTGAACACTGACGGTTCTGATCAGTGTAAATCAGAAAATGCAGATTCTGCAGGTGAAGCTGAGGACGATGATGATTTTATTACCAATGAGGTAAAGCGGAGGCTGAAAGAATTGAGAAGAAACAGTTTTATGGTGTTGATTCCTGAAGAAGATTCCTGCCTGGAGGATGGGGAGGATGAAGAGGAAGAGGGAGAGACAAGCTCAAATGAATGGAGGGATGTGGAGGCAGAAGGTCAGCAATGGTGGCGTGGTTTTGATGCTGTATTTGAAAAGTACTGCGAAAGAATGCTATTCTTTGACCGGATGAGCACTCAACAGCTTAGTGAAGTTGGCAAAGGTTCACAGTACACTTCAACTTCATCTCCAAGATCTGCATCAAAGAAGCTGGCTTCTCCCCTTCGTTGTCTTTCCTTGAAAAAGTTTGAAGAGTCTGATGATGAGGCTGAACATCTTCAACAGCCTGAGAATGACCCTTACCAGGATATTGAAACAGCATATGTAGGTCAAATTTGCTTGACTTGGGAGGCGCTTCATTGTCAGTACTCTCATATGAGTCAAAAAATATCATGGCAACATGATAATCCTACCTTTTACAACCTCAGTGCGCAAGAGTTTCAACAGTTCCAGGTTCTATTACAAAGGTTTATTGAAAATGAACCTTTTGAGCAGGGCCGTCGAGCTGAAATTTATGCTCGCACAAGGAACAATTTGCCTAAACTGCTTCAGGTTCCTAATATACGAGGTTCAGATCATGAATTGACTGATGATTCAGAGATGAGAGTTCTTGCCCCTGATCTGATCAGGATAATTGAAAGCTCTATCCTTACATTCCACCTTTTCCTGAAAAGGGACAAGAAAAAGTCAAGTGGTGCTACCAACCTGTTTGGAAATCAGAACCAGCTTGCAACTCCGCTACAACAGATTCAGTCGACTCTTGAAAAGAAAGTGGTGAAGCTGAAGGAACTgcgcagaaaaaaaaaaggttggaaGAAGAATTCGTGGCCCCAAAAGCATGAGGACATTCAGCTTTTGCTTGGCCTTATCGACGTGAAGATCCTATCAAGGGTTCTGAGAATGACGAGGATGACTAGAGAACAACTGCTTTGGTgtgaagaaaagatgaaaaaactGGATTTATCAAATAGTAGGTTAGAGAGGGATCCTTGTCCAATCCTCTTCCCTTGCTAG 1287 0.4157 MEFLKIKKFRKSQKADGEKDLADKAVPVPEEPKLNTDGSDQCKSENADSAGEAEDDDDFITNEVKRRLKELRRNSFMVLIPEEDSCLEDGEDEEEEGETSSNEWRDVEAEGQQWWRGFDAVFEKYCERMLFFDRMSTQQLSEVGKGSQYTSTSSPRSASKKLASPLRCLSLKKFEESDDEAEHLQQPENDPYQDIETAYVGQICLTWEALHCQYSHMSQKISWQHDNPTFYNLSAQEFQQFQVLLQRFIENEPFEQGRRAEIYARTRNNLPKLLQVPNIRGSDHELTDDSEMRVLAPDLIRIIESSILTFHLFLKRDKKKSSGATNLFGNQNQLATPLQQIQSTLEKKVVKLKELRRKKKGWKKNSWPQKHEDIQLLLGLIDVKILSRVLRMTRMTREQLLWCEEKMKKLDLSNSRLERDPCPILFPC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3574 428 Coils Coil 338 365 - -
Ssu4g3574 428 MobiDBLite consensus disorder prediction 84 101 - -
Ssu4g3574 428 PANTHER DNA LIGASE (DUF1666)-RELATED 1 428 - -
Ssu4g3574 428 MobiDBLite consensus disorder prediction 82 106 - -
Ssu4g3574 428 Pfam Protein of unknown function (DUF1666) 193 427 IPR012870 -
Ssu4g3574 428 MobiDBLite consensus disorder prediction 1 27 - -
Ssu4g3574 428 PANTHER DUF1666 FAMILY PROTEIN (DUF1666) 1 428 - -
Ssu4g3574 428 MobiDBLite consensus disorder prediction 142 161 - -
Ssu4g3574 428 MobiDBLite consensus disorder prediction 1 60 - -
Ssu4g3574 428 MobiDBLite consensus disorder prediction 142 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3574 Ssu-Chr4 86802771 86805557 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3574 - - gmx:100776804 743.421