LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3571	ATGGCTGCCGTGGGAGTTTTGAAGCATGCGGAGAGCGCACCGGAGGAGAATTGCTCCGCCAAGCCCACGAAGCAGGGCGAAGGTCTCCGAAATTACTATTCTCTTCACATCCAGGAGCATCAGCTCCTTCTGCGTCAAAAGACCCACAATCTCAACCGTCTCGAGGCTCAACGAAATGAGCTTAATTCCAGGGTGAGGATGCTACGCGAAGAGTTGCAGCTTCTGCAGGAGCCCGGATCTTATGTGGGTGAAGTTGTAAAAGTGATGGGCAAAAACAAAGTCCTCGTCAAGGTCCATCCAGAAGGAAAATATGTTGTTGATATCGACAAAAATATTGACATTACAAAGATTACTCCATCAACAAGAGTTGCCCTCCGCAACGACAGTTATGTTCTTCATTTAATTCTGCCGAGTAAAGTTGATCCATTGGTCAATCTGATGAAAGTTGAGAAAGTTCCCGATTCTACGTATGACATGATTGGTGGTTTAGACCAgcaaatcaaagaaataaaagagGTCATTGAGCTACCAATCAAACATCCTGAGTTGTTTGAGAGCCTTGGAATTGCACAACCAAAGGGTGTCCTGCTCTATGGGCCACCTGGCACAGGAAAAACATTGTTGGCTAGGGCAGTGGCTCATCATACTGACTGCACTTTCATCAGGGTATCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAGCTTTTCGTTATGGCCAGGGAACATGCTCCATCGATTATCTTCATGGATGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAGTGGCAATGGTGATAGTGAGGTACAACGCACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCCACGAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGGCGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGATTCTCGGCTGGATATTTTGAAAATCCATTCAAGAAGAATGAATTTAATGCGTGGCATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCTGAACTTAAgGCTGTATGCACTGAAGCTGGTATGTTTGCTTTGAGGGAGAGGAGGGTACATGTGACTCAGGAGGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGGAGACTGAAAAAAATATGTCATTGCGGAAGTTGtggaaatga	1251	0.438	MAAVGVLKHAESAPEENCSAKPTKQGEGLRNYYSLHIQEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEDSRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3571	416	Gene3D	-	148	329	IPR027417	-
	Ssu4g3571	416	MobiDBLite	consensus disorder prediction	1	25	-	-
	Ssu4g3571	416	PANTHER	BNAA02G04630D PROTEIN	22	413	IPR035261	GO:0036402
	Ssu4g3571	416	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	153	405	IPR027417	-
	Ssu4g3571	416	ProSitePatterns	AAA-protein family signature.	299	317	IPR003960	GO:0005524\|GO:0016887
	Ssu4g3571	416	Gene3D	-	334	411	-	-
	Ssu4g3571	416	SMART	AAA_5	191	331	IPR003593	-
	Ssu4g3571	416	Pfam	ATPase family associated with various cellular activities (AAA)	195	328	IPR003959	GO:0005524\|GO:0016887
	Ssu4g3571	416	Gene3D	-	40	147	IPR012340	-
	Ssu4g3571	416	PANTHER	26S PROTEASOME REGULATORY SUBUNIT	22	413	-	-
	Ssu4g3571	416	Coils	Coil	37	71	-	-
	Ssu4g3571	416	TIGRFAM	26Sp45: 26S proteasome subunit P45 family	41	401	IPR005937	GO:0005737\|GO:0030163\|GO:0036402
	Ssu4g3571	416	Pfam	Proteasomal ATPase OB C-terminal domain	82	137	IPR032501	-
	Ssu4g3571	416	Pfam	AAA+ lid domain	352	394	IPR041569	-
	Ssu4g3571	416	CDD	AAA	161	328	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g3571	Ssu-Chr4	86778051	86783030	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g3571	156	412	Miscellaneous Gene Families	AT5G58870	40.541	1.93e-55	194

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3571	K03066		-	gmx:100812783	773.852