Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3568 ATGGGGCAGTCCAAGTCCAACACTGACACCGTGCACTCACCGCTAGTTACTTATGCATCCATGATATCTCTGCTCACACTCTGTCCTCCATTTGTCATACTCTTATGGTACACCATGACACTTGCTGACGGATCAGTTTCCCAGACATGGGATTATTTGAGGCAGAATGGGGTACAGGGCTTTCTACATATATGGCCCAAGCCCACTGCTTCCGCTTGCAAAATCATTGCAATCTATGCTGCATTTGAAGCTGCGCTTCAGCTTCTTCTGCCTGGTAAAACCGTTTATGGCCCTATTTCTCCAACTGGCCACCGACCTGTCTACAAGGCAAATGGTGTGGCAGCGTATTTAGTCACCTTGACTACTTATCTTGCCCTTTGGTGGTTTGGGATATTCAACCCTACAATTGTTTATGATCATTTGGGAGAAATATATTCTGCACTCATCTTTGGGAGCTTTGTCTTCTGTATTTTCTTGTACATAAAAGGACATTTGGCACCATCTTCTACAGATTCTGGCTCATCTGGAAACATAATCATTGATTTTTACTGGGGTATGGAGCTCTATCCACGCATAGGAaaatattttgacataaaaGTTTTCACAAACTGCAGATTTGGAATGATGTCATGGGCTGTTCTTGCATTGACCTACTGCATAAAGCAGTatgaagaaaatggaaaagtagCCGACTCAATGCTtgtaaatactacattaatgcTGGTATATGTTACCAAGTTTTTCTGGTGGGAAGCTGGATATTTGAACACAATGGATATTGCACACGATCGAGCTGGATTTTATATTTGCTGGGGTTGCTTGGTGTGGGTTCCATCTGTATATACATCTCCTGGAATGTACCTTGTCAACCATCCTGTAAATCTTGGCACCCAGCTAGCGCTCTCAATTTTCGTAGCTGGTATTCTTTGCATATATATCAACTATGATTGTGACAGGCAAAGGCAAGAATTTCGTAGGACAAATGGAAAAGGCACTGTCTGGGGAAAAGCTCCATCAAAGATAGAGGCCTCGTATACTACTACTGCTGGGGAAACTAAAAGAAGCCTTCTTTTAACCTCTGGATGGTGGGGATTATCTCGTCATTTTCATTATGTCCCTGAAATACTAGCTGCTTTCTTCTGGACAGTCCCAGCTGTTTTCAATCATTTTTTGCCTTACTTCTACGTGATATTTCTTACTATCCTTCTCTTTGATCGAGCAAAACGAGATGATGATCGTTGCAGATCCAAGTATAGCAAGTACTGGAAACTTTATTGCGACAAGGTACCTTACAGAATCATTCCAGGAATATACTGA 1317 0.4085 MGQSKSNTDTVHSPLVTYASMISLLTLCPPFVILLWYTMTLADGSVSQTWDYLRQNGVQGFLHIWPKPTASACKIIAIYAAFEAALQLLLPGKTVYGPISPTGHRPVYKANGVAAYLVTLTTYLALWWFGIFNPTIVYDHLGEIYSALIFGSFVFCIFLYIKGHLAPSSTDSGSSGNIIIDFYWGMELYPRIGKYFDIKVFTNCRFGMMSWAVLALTYCIKQYEENGKVADSMLVNTTLMLVYVTKFFWWEAGYLNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGTQLALSIFVAGILCIYINYDCDRQRQEFRRTNGKGTVWGKAPSKIEASYTTTAGETKRSLLLTSGWWGLSRHFHYVPEILAAFFWTVPAVFNHFLPYFYVIFLTILLFDRAKRDDDRCRSKYSKYWKLYCDKVPYRIIPGIY 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3568 438 Pfam Ergosterol biosynthesis ERG4/ERG24 family 58 438 IPR001171 GO:0016020|GO:0016126|GO:0016628
Ssu4g3568 438 PANTHER 7-DEHYDROCHOLESTEROL REDUCTASE 7 438 - -
Ssu4g3568 438 ProSitePatterns Sterol reductase family signature 1. 176 191 IPR018083 GO:0016628
Ssu4g3568 438 Gene3D - 228 437 - -
Ssu4g3568 438 PANTHER DELTA(14)-STEROL REDUCTASE 7 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3568 Ssu-Chr4 86727870 86732825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3568 8 438 Miscellaneous Gene Families AT1G50430 83.527 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3568 K00213 - gmx:102659420 847.04