Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3565 ATGGCGATGGCCTCATTAATGGGCGTAGCTTCACAGAGCTCCATTTGCACGCGTCCGTTTGTTTTTCACCCATTCCAGCACCAGCACAGTCAAATTCGTTGTTCTACGTTGAACCTCAAATACAAATCTCAACCCGTTTGTCTGAAGTCCCAGTGCAATGGAGCACCAGCACCTGTTATTGTGTCGAGAGAAAGCGACAGCGAGATTCTGCGGGGGTGCACTCGGACGTTGACGACGCTGATGGGACTGGCCGTACTGTTGGTGAAGGCGATTCCTGTGGGGAGTTGGAATTTGTTGGGTATGAGTAGCAATAGCATTATCAACAGCAACAGCGTGTCCACGATGGGCGCGTTGTTCTTCGCGTCTTTAAGGGACCGTCCGAGCGGGGCGCTGAACACGCCGCTGACGGTTGTGGCGGCGGGACTGGGGAAGTGGCTGGACATATACAGCGGGGTTTTGATGGTTAGGGTTTTGCTGAGTTGGTTCCCAAACATCCCCTGGGAACGCCAGCCTCTCTCCGCAATCAGAGACCTCTGCGATCCCTATCTCAACCTTTTCCGTAATATCATTCCCCCCGTTTTTGACACCCTCGACGTTAGTCCTCTTCTCGCTTTCGCCGTATTGGGCACTCTTGGCTCTATTCTCCAGACTGCTATGTGA 660 0.5318 MAMASLMGVASQSSICTRPFVFHPFQHQHSQIRCSTLNLKYKSQPVCLKSQCNGAPAPVIVSRESDSEILRGCTRTLTTLMGLAVLLVKAIPVGSWNLLGMSSNSIINSNSVSTMGALFFASLRDRPSGALNTPLTVVAAGLGKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAFAVLGTLGSILQTAM 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3565 219 Pfam YGGT family 146 214 IPR003425 GO:0016020
Ssu4g3565 219 PANTHER YLMG HOMOLOG PROTEIN 1-2, CHLOROPLASTIC 24 218 - -
Ssu4g3565 219 PANTHER YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC 24 218 IPR003425 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3565 Ssu-Chr4 86696833 86697492 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3565 - - gmx:100819562 255.373