Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3560 ATGGTGATGAAGGCGAGCGAGTTGCCATTGGTAGATTACTACGACTACATCATCGTGGGGGGCGGCACTGCAGGGTGCCCACTGGCGGCGACACTGTCGCAGGAGTTTCGGGTGCTTTTGCTGGAACGAGGAGGCGTCGGGCGCGGCAAGCCCGAGTTGATGTACCAAGAAGGGTTCTTGACGAACCTGTTAAACAGTGAGAGTAGGGACTCTCCTGCCCAAGGTTTCATTTCGGAAGAGGGTGTCCCCAACGCGCGGGGGCGCGTTCTTGGGGGCAGCAGCGCCATCAACGCCGGCTTCTACAGCCGAGCCGACGGGGATTTCTTCCGCAAGTCGGGTTTACCTTGGGACCTGGCCCTCGTCAACCAATCGTATCAATGGGTGGAGAGGCAAATTGTGTTCAGACCCAATCTCAAGTCGTGGCAATCCGCAGTTCGCGATGGGTTGCTGGAAGCAGGGGTCACTCCCTACAACGGTTTCACCCTGGACCACGCAACCGGAACCAAGATTGGGGGGTCCACCTTCGACAGCGCTGGCAGAAGACACACCTCTGCGGATCTTCTGAGATATGCCCGCGCTTCCAACATCAAGGTGGCTGTTCACGCCACCGTCGAGAGGCTGCTTCTCGCTGCTTCCACTGCAATCGGAGTCCTCTACAGAGACGAGAGAGGGAGGTACCACCACGCATTCTTAAGGGATCAACATGGAGAGGTCATTCTCTCCGCTGGCGCCATCGGAACCCCTCACCTTCTCCTCTTAAGCGGGATCGGTCCCAGGCCTTATCTCTCTTCCTGGGGGATTCCCGTCGCTCACCACCTTCCCTACGTCGGCCATTTCCTCTACGATAATCCACGCAACGGAATTACCATTCTGCCCTCCCTTCCACTCGACCATTCTCTCATTCAAGTCGTCGGCATCACAAATTCCGGGGCTTACATTGAAGCCGCATCCAACCTAGTTCCTTTCACCTCCCCTCCTCACACGCTCTACCTCACCGTCGCTACCATCATTTCCAAGATTTCGGGGCCACTCTCCTCTGGCTTTTTAAGACTCGCTTCCACCGATGTCAACGTCAATCCTCTTGTCAGATTCAATTACTTCGACAACCCCCTCGATGTTGAACGCTGCGTCAACGGCACCAGGAAGATAGCGGACATTCTCAAGAGCAGGGCCTTAAAGGATTTCAAGTGGGAGGGAGGAGACTACTTCAGGTTCGTAGGGCCTGCTTTGCCCCTTCACCAAACCGACTACACTCGGATGGCGGATTTCTGCCGCCGGACGGTCAGCACCATATGGCACTACCACGGAGGCTGCGTCGTCGGCAGGGTCGTTGATCCTCATCTCAAGCTCATCGGAGTTGCTTCCCTTCGTATCGTCGACGGATCCGTTTTTAGCGTATCGCCAGGAACTAATCCTCAGGCCACCCTAATGATGCTAGGACGCGTGCTTTCTTTGCTTTCCAGGTATAAGTTACAGCTTAAAGTAATTGATGACACTGAATTTGCTACTTTTATAATGTTCGATCGTGTTGCGGCTTAA 1539 0.5504 MVMKASELPLVDYYDYIIVGGGTAGCPLAATLSQEFRVLLLERGGVGRGKPELMYQEGFLTNLLNSESRDSPAQGFISEEGVPNARGRVLGGSSAINAGFYSRADGDFFRKSGLPWDLALVNQSYQWVERQIVFRPNLKSWQSAVRDGLLEAGVTPYNGFTLDHATGTKIGGSTFDSAGRRHTSADLLRYARASNIKVAVHATVERLLLAASTAIGVLYRDERGRYHHAFLRDQHGEVILSAGAIGTPHLLLLSGIGPRPYLSSWGIPVAHHLPYVGHFLYDNPRNGITILPSLPLDHSLIQVVGITNSGAYIEAASNLVPFTSPPHTLYLTVATIISKISGPLSSGFLRLASTDVNVNPLVRFNYFDNPLDVERCVNGTRKIADILKSRALKDFKWEGGDYFRFVGPALPLHQTDYTRMADFCRRTVSTIWHYHGGCVVGRVVDPHLKLIGVASLRIVDGSVFSVSPGTNPQATLMMLGRVLSLLSRYKLQLKVIDDTEFATFIMFDRVAA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3560 512 PIRSF Alcohol_oxidase 307 486 IPR012132 GO:0050660
Ssu4g3560 512 PIRSF Alcohol_oxidase 4 315 IPR012132 GO:0050660
Ssu4g3560 512 ProSitePatterns GMC oxidoreductases signature 2. 243 257 IPR000172 GO:0016614|GO:0050660
Ssu4g3560 512 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Ssu4g3560 512 Pfam GMC oxidoreductase 343 480 IPR007867 GO:0016614
Ssu4g3560 512 SUPERFAMILY FAD/NAD(P)-binding domain 13 302 IPR036188 -
Ssu4g3560 512 Gene3D - 134 430 - -
Ssu4g3560 512 Gene3D - 14 480 IPR036188 -
Ssu4g3560 512 PANTHER OSJNBA0019K04.7 PROTEIN 2 485 - -
Ssu4g3560 512 Pfam GMC oxidoreductase 14 283 IPR000172 GO:0016614|GO:0050660
Ssu4g3560 512 PANTHER (R)-MANDELONITRILE LYASE-LIKE 2 485 - -
Ssu4g3560 512 SUPERFAMILY FAD-linked reductases, C-terminal domain 280 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3560 Ssu-Chr4 86617432 86622751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3560 3 483 Miscellaneous Gene Families AT5G51950 44.879 8.28e-142 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3560 K08248 - gmx:100820069 825.469