Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3500 ATGTCGGGCCCACCCAGAGTTCGATCCATGAACGTGGCCGTCGGCGACCCCGAGGCGCGTCGGGTGCTCGTCCCCGCCGGCAACAAGGTTCGCCCCATCGATGGGCGGAAGTCGGTGAAGAAATCGCCGTCGGAGACGGAGAAGAAGCCGGTGGTGCATTCCGCACAGCAATGCGTCTCCGCTCCGCCGGCTATTTGGCGGCGGCAGGATCACCACCAGGCCGTGCTGAAGAACCTGTCGATGAACGCTTCGTGCTCCTCCGACGCGTCGTCGACGGATTCCTCCACTCACAGCAGCGGCGCGTCGTCGAGCGGGAAGGTGGCGCGGCGGGTCAGTGTGCCGTTGAGGAAGAAGCAGGGTGGTCCCAAGACGGAGAAGGTGATTAGTGACAATGTGGCTGGTTCTGATGATGCTGATTTGAGTGATAGCTTGGAGGGCAAGAAAAGGTGTGCTTGGGTTACACCAAATACAGAGCCATGTTATGTTGCTTTTCATGATGAAGAGTGGGGAGTTCCTGTTCATGATGACAGGAAACTGTTTGAGTTGCTCAGCTTCTCTGGAGCCTTGGCTGAACTTACGTGGCCTACTATTCTTAGCAAAAGGAAGTTATTTCGGGAAGTCTTTTTCGATTTTGATCCAAGTGCTGTTTCACGAATGAATGAGAAAAAGATAGTTGCACCAGGAAGTCCTGCCAACACATTGCTATCAGAGCTCAGGTTGCGATCCATCATTGAAAATGCACGTCAGATGTGTAAGGTAATTGAAGAGTTTGGGTCCTTTGACACATTCATTTGGAACTCTGTGAACCATAAGCCCATAGTCAGCCAGTTCAGGTACCCACGCCAGGTACCTGTCAAATCTCCAAAAGCAGAAGTCATAAGTAAAGACCTTGTAAGGAGAGGATTCAGGAGTGTTGGACCAACAATCATCTATACTTTCATGCAAGTGGCTGGGCTAACAAATGACCACGTTATCAGTTGCTTCAGATTCAAGGAGTGTACCTCCAATGCAGAAGCAATGGACAAAGAGAGCTCCCTCAATTCTAAGGTTAAGGAGAAGTCAAACGAGGAGCCAACTGAGGTGGGTCTGTTGCTGGCTGTGAACAAATTGAACTTCACCTCTAAGTAG 1128 0.5124 MSGPPRVRSMNVAVGDPEARRVLVPAGNKVRPIDGRKSVKKSPSETEKKPVVHSAQQCVSAPPAIWRRQDHHQAVLKNLSMNASCSSDASSTDSSTHSSGASSSGKVARRVSVPLRKKQGGPKTEKVISDNVAGSDDADLSDSLEGKKRCAWVTPNTEPCYVAFHDEEWGVPVHDDRKLFELLSFSGALAELTWPTILSKRKLFREVFFDFDPSAVSRMNEKKIVAPGSPANTLLSELRLRSIIENARQMCKVIEEFGSFDTFIWNSVNHKPIVSQFRYPRQVPVKSPKAEVISKDLVRRGFRSVGPTIIYTFMQVAGLTNDHVISCFRFKECTSNAEAMDKESSLNSKVKEKSNEEPTEVGLLLAVNKLNFTSK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3500 375 MobiDBLite consensus disorder prediction 84 142 - -
Ssu4g3500 375 MobiDBLite consensus disorder prediction 1 57 - -
Ssu4g3500 375 Pfam Methyladenine glycosylase 156 329 IPR005019 GO:0006284|GO:0008725
Ssu4g3500 375 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE I 1 374 - -
Ssu4g3500 375 Gene3D Hypothetical protein; domain 2 147 330 - -
Ssu4g3500 375 MobiDBLite consensus disorder prediction 84 106 - -
Ssu4g3500 375 MobiDBLite consensus disorder prediction 33 48 - -
Ssu4g3500 375 PANTHER OS04G0501200 PROTEIN 1 374 - -
Ssu4g3500 375 SUPERFAMILY DNA-glycosylase 148 333 IPR011257 GO:0003824|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3500 Ssu-Chr4 86029410 86033823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3500 K01246 - gmx:100805836 616.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3500 4 86029410 86033823 Ssu4g3500 4 86029410 86033823 ECH