Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3493 ATGACTTCCCCTGAGACTGCAGAATTCTCTGAGAGGAACACCGCAAAGAGGCTGAGACATGCAGGGAGGAAGCTCCTCAAGTGCCATTCCGTTGATAAACTTCTGCAACAGCTTGATAAATTGGAGCTGCTATTATCAACCCTGGAACAAGAACCAACCAAGCCAATTCAAGAATCACTTGTACCTTCAATGAAGGCATTGATTTCCGATGATCTTTTGAGGCACACAGATGAGGATGTTAAGATTTCAGTTACATCTTGCATCACTGAGATTACAAGAATCACCGCACCAGATATTCCTTATGAAGATGAACAAATGAAGGAAATCTTCAAGCTCACAGTAGCATCTTTCGAGAAATTGTCTCACACATCTGGCCATGGCTGTGAAAAAGCACTTACCATACTTGATAATGTCAATAAGGTCAGACTATGCTTGGTCATGCTGGACCTTGAGTGTAATGACCTGGTCATTGAAATGTTTCAGCATTTCTTGAGATTTGTAAGGTCAAACCATCCCTGTAATGCAATTCATTCAATGGAATCAATAATGACCCTGATCTtgcaagaaagtgaaaaaatttcCTCAGATCTTCTTAGACCTCTGTTGGATAGCATAGGGAACGAAAATCAGACTATTTCACCTATTTCTTGGACATTGGGGAAGAAAGTAATTAGCAACTGTGCTGTTAAGCTCAAGCCTTATCTCATGATGGCAGTGGAGTCCTCAGGCAGAGCTCTAAATGAGTATGCACAGATAGTAACTAATATTTGCCAGAATGAATCTGAATCCCCTCAATGTGATGATTCAAATGGTTCTAAGAAGACACCGGTTCAAGAAGCTGAGAACAAGCTTGATGTTCCTAAAGATGCAGAGGAACAACCGCatgatGCAACCAATGGGCATGAACCAGATATTAGTGGTGAGAAAGATGTCCAAATTTTGGATGATACAAAGTCAAACATAAGAAGTGCGAGTGCTTCTCCTATGGATGGTGaagctataaaaaaatatggttcAAAAAGGAGACCACATTCAGAAATTACTAAGAACTCCAAAAGAGGAAATGCAAAAGCCAATTTGGAAACTGACAATTTAGAGCCTGTTCAGGAACCAAAATCAGAAACTCAGCTGAATACTATGCCTAGGAAGAGGGGCCGTAACCGTAAGCCTAATTCTTTAATGAATGAAGAGGAAGGCTATGATCATTCATGGATTTATCGGGAAACAAAACCTGGGAAATCAGCTCTATCCAGAAAGGCTCGCAATTCCAGCTCTGCTTTTCCATCTTCTGAAAAACCTACTTCCAGAAAGGATAAGTTGCATCGAAAGCCTAAAACTGTAAATGAAGCTCTAGTTTCTGAGCCAAAAAGTGAGAACATAGCAAAGCCTGCCCAATCCAGAAGGACTCACAATATTGGCAGTGATTTTCCTCCTAATGATAACCCTGCTTCCAGCAAGGATAGTTTGCTGTCAAAGCCTGAAGATACAAGCGATGGTCGTGAAGCTTTAGCTTCTAAACCTAAAGTTGATGAGAATACTGATGCTGCTCCttctataaataataacattccTGATGGACGTTGCATCAAACAAGGTGGGTCAAGGAAAATAAATAGCACTGGGAATCAAGATGTTCACTCTAATTCTGTGTCAATGTTAAAGGAAGACAACTTGAATCCTCTGCTTGTGGATACTTCTTTGGATTCCCCAGCAGTTAGGTTGGAAAAGGAATCTGAAGTAAGGAAGGATTCTGAGCTAAAACCCATTAGGAAAATCAAATTTTCTGTAAAGTTTGGAGGGAAAATTGCTGTGGCTCCAGAATCAGTACTTGCTAAAATGGAACCTAATGTTTCTTGTGGAGATGAGGGGAAACACAAGTCATCTATGAATGTTGagctagaaaataaagaaaggggCAGATTGTCCGCTCAAACAGATGTTAAGAAAAGGAGGAGGCTTAATGTTTCTCCTAATAAGGGTCTCAACAAATCATCAGCTGTGAAGGAGCTGATTGCAGAATCTGCAAGTAAAATGTTGAGTGGTGTCAAGGAAACCCCACTAGCAAGGCTGAGGAGAAGACACGTTACTGTGAATGCAGAGGCATCTGAATCTCATGAAAATGGTAACTCATTGGTTGGATGTAGGATCAAGGTCTGGTGGCCAAAGGATAAGACGTAA 2178 0.3958 MTSPETAEFSERNTAKRLRHAGRKLLKCHSVDKLLQQLDKLELLLSTLEQEPTKPIQESLVPSMKALISDDLLRHTDEDVKISVTSCITEITRITAPDIPYEDEQMKEIFKLTVASFEKLSHTSGHGCEKALTILDNVNKVRLCLVMLDLECNDLVIEMFQHFLRFVRSNHPCNAIHSMESIMTLILQESEKISSDLLRPLLDSIGNENQTISPISWTLGKKVISNCAVKLKPYLMMAVESSGRALNEYAQIVTNICQNESESPQCDDSNGSKKTPVQEAENKLDVPKDAEEQPHDATNGHEPDISGEKDVQILDDTKSNIRSASASPMDGEAIKKYGSKRRPHSEITKNSKRGNAKANLETDNLEPVQEPKSETQLNTMPRKRGRNRKPNSLMNEEEGYDHSWIYRETKPGKSALSRKARNSSSAFPSSEKPTSRKDKLHRKPKTVNEALVSEPKSENIAKPAQSRRTHNIGSDFPPNDNPASSKDSLLSKPEDTSDGREALASKPKVDENTDAAPSINNNIPDGRCIKQGGSRKINSTGNQDVHSNSVSMLKEDNLNPLLVDTSLDSPAVRLEKESEVRKDSELKPIRKIKFSVKFGGKIAVAPESVLAKMEPNVSCGDEGKHKSSMNVELENKERGRLSAQTDVKKRRRLNVSPNKGLNKSSAVKELIAESASKMLSGVKETPLARLRRRHVTVNAEASESHENGNSLVGCRIKVWWPKDKT 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3493 725 MobiDBLite consensus disorder prediction 514 547 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 416 431 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 432 449 - -
Ssu4g3493 725 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 15 724 IPR039776 GO:0007064
Ssu4g3493 725 MobiDBLite consensus disorder prediction 389 415 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 278 316 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 491 508 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 260 277 - -
Ssu4g3493 725 SUPERFAMILY ARM repeat 49 246 IPR016024 -
Ssu4g3493 725 Coils Coil 31 51 - -
Ssu4g3493 725 PANTHER SISTER CHROMATID COHESION PDS5-LIKE PROTEIN 15 724 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 334 351 - -
Ssu4g3493 725 Pfam Sister chromatid cohesion protein PDS5 protein 32 235 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 260 547 - -
Ssu4g3493 725 MobiDBLite consensus disorder prediction 459 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3493 Ssu-Chr4 85878962 85886003 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3493 - - gmx:100812058 1030.01