Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3491 ATGCCGCTGATTTTACCGAAAAGCGATTCGATCGAGATTCGCGAGGTGTGGAACGACAACGTGGAAGAGGAGTTCGCGTTGATTCGCGAGATCGTGGACGATTATCCTTACATAGCGATGGACACGGAGTTTCCGGGAATCGTCCTCCGGCCGGTGGGGAATTTCAAGAACAGCTACGACTACCATTACCAAACCCTAAAGGACAACGTGGACATGCTGAAGCTCATCCAATTGGGCCTCACCTTCTCCGACGAGCAGGGCAACCTTCCCACGTGCGGCGACGCCGGCACGTGCTGCATCTGGCAGTTCAACTTCCGCGAGTTCAACGTCAACGAGGACGTCTTCGCCAACGACTCCATCGAGCTTCTGCGCCAGAGCGGCATCGACTTCAGGAAGAACAACGAGAAGGGCATCGACGCGCACCGTTTCGGTGAGCTTCTGATGTCGTCTGGGATTGTGTTGAACGATAGCGTTCATTGGGTCACCTTCCACAGCGGTTACGATTTCGGGTACCTGCTGAAGCTCTTGACGTGTCAGGATTTGCCTGATACGCAGGTGGGGTTCTTCAATTTGATCAACATGTACTTCCCCACCGTGTACGACATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCATGGAGGGTTGAACAAGCTCGCCGAGTTGTTGGAGGTGGAGAGGGTTGGGATTTGCCATCAGGCTGGTTCGGATAGCTTGCTCACTTCTTGTACGTTCAGGAAATTGAAGGACAATTTCTTTAGTGGCTCCTTGGTGAAGTATGCGGGTGTCTTGTATGGGTTAGGTGTTGAGAATGGACAGGGTGCTCATtga 831 0.5271 MPLILPKSDSIEIREVWNDNVEEEFALIREIVDDYPYIAMDTEFPGIVLRPVGNFKNSYDYHYQTLKDNVDMLKLIQLGLTFSDEQGNLPTCGDAGTCCIWQFNFREFNVNEDVFANDSIELLRQSGIDFRKNNEKGIDAHRFGELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCQDLPDTQVGFFNLINMYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLKDNFFSGSLVKYAGVLYGLGVENGQGAH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3491 276 Gene3D - 1 271 IPR036397 GO:0003676
Ssu4g3491 276 Pfam CAF1 family ribonuclease 16 138 IPR006941 -
Ssu4g3491 276 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 6-RELATED 4 275 - -
Ssu4g3491 276 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 4 275 IPR039637 GO:0004535|GO:0030014
Ssu4g3491 276 Pfam CAF1 family ribonuclease 161 221 IPR006941 -
Ssu4g3491 276 SUPERFAMILY Ribonuclease H-like 4 269 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3491 Ssu-Chr4 85851769 85852599 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3491 K12581 - gmx:100789409 551.592