Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3490 ATGTCATCAGACTCAGAGTCACGAGATATTCCACTTTTGTTGACCCTTCGAGCATATCAAAACACTGACATAGTGACATTCCCCAATTTCACAGTTTCACGTTTCACGTTTCACGGTGCCGATTATTTCTCTCGCGTTCTCTGTGAAGCACTCTCCTCAGTAGCTACAATGGACTACAGCTCTGAAGAAGACTCGGATATCAGTGAATCTGAGATTGATGAGTACTCAGAGAAACCATATGAACTGTTAAGGGCTGGGAAATACAAGGTTAAAAATTTGAATGGAACTCTTAGATGTCCTTATTGTGCTGGGAAGAAAAAACAAGATTACAAATATAAGGATTTATTGCAACATGCATCAGGAGTTGGTAAGGGTTCTGCTAACAGAAGTGCAAAACAAAAGGCAAACCACCTTGCTCTAGCCAAGTATTTGGAGACTGACCTAGCCAGTGAAGCAGAGCCAATCCAGCGACCAGCTTTACCCCAAGCTGTTAATCAACCTTTACAGCAAGATGATCTTTATGTTTGGCCCTGGACAGGCATAATTGTTAACATAAAGAGTAAATCGATTGATTCTGGATACTGGTTGAAGGAATTTGCAAAATTCAGACCAATAGATTTTCATATATTCTTGAAAGATAGTGACCTGATTGCTCAGGCTGTAATAGACTTCAATAATGACTGGAATGGTTTCATGAATGCAAGTGAATTTGAGAAGTCATTTGAAACTGCACGTCATGGTAAAAAGGATTGGAATTCAAGGAAGTTAGAGGCTGGCCCAAATATTTATGGATGGGTTGCACGGGAAGATGATTATAATTGTGGAGGGCCAATAGGGGAATACCTCCGCAACAAAGGAAGGTTGAGGACGGTTTCAGATATTGTTCAAGAAGCATCTGAAAGCAGAAATAGTATTGTGACGAACCTAACTAATGAAATTGAGATTACAAACGAAAACCTTGACAAAATGCAGTATAAGTATAATGAGAAGACTATGTCCTTGAGTAGGATGCTTGAAGAGAAAGATAAGCTTCACAATGCTTTTGAAGAAGAATCAAGGAATATGCAGCGTAGAGCTCGTAACGAGGTACGGAGGATCTTGGATGAACAAGAAAAGTTGAGTAGTGAATTGGAGGAAAAAAGGCGGAAGCTTGATTCCTGGAGTAGAGATCTAAACAAACGTGAGGTACTAACTGATCAAGAGAGGcagaaacttgaagaagaaaagaagaagAAAGATTTGAGGAATGAATCACTCCTATTGGCTTCTAAGGAACAGCAGATAGCTGATCAAAATGTCTTAAAGCTTGTTGAGGAGCAAAAGagagagaaagaggaggccTATAACAAGATACTTCAGTTGGAAAAACAGCTAGATGCCAAACAGAAGTTGGAAATGGAAATTGAAGAGTTAAAAGGGAAATTGCAAGTTATGAAGCATCTTGGAGATGAAGATGATGCAGCTGTCcagaataagataaaagaaatgaatgatGAATTgcaagaaaaaatagataatttggaAAATATGGAGGCCATGAATCAAACCCTCATTGTGAAGGAGCGCCAAAGTAATGATGAACTACAGGAAGCTcgtaaagaattaataaaaGGGCTAGATGATATGCTGAATGGTCCTAGAACTAATATTGGGCTCAAGAGAATGGGAGAGCTTGATCAGAAGGTTTTTGTGAATAACTGCAAGAAAAGATATCCTCTTGAAGAAGCTGGGACCAGGGGTGTTGAGCTTTGCTCTTTGTGGCAGGAGAACGTGAAGAATTCAGCTTGGCATCCATTTAAAGTGATTACAGTTGATGATAAAGTAGAGAATATTATAGATGAGGAAGATGATAAGTTACGAAGCCTCAAGCAGGAATGGGGAGATGAGATATATTCAGCTGTTGTTACAgccttaaaagaaataaacgaATACAATGCAAGCGGTGGGTATACTGTTGTGGAGCTCTGGAACTtcaaggagaaaagaaaagctaCATTGAAAGAagttatcatttatattatgGATCATATCAAGCCGCTTAAGCGCAAGAGAGCTTAG 2058 0.3669 MSSDSESRDIPLLLTLRAYQNTDIVTFPNFTVSRFTFHGADYFSRVLCEALSSVATMDYSSEEDSDISESEIDEYSEKPYELLRAGKYKVKNLNGTLRCPYCAGKKKQDYKYKDLLQHASGVGKGSANRSAKQKANHLALAKYLETDLASEAEPIQRPALPQAVNQPLQQDDLYVWPWTGIIVNIKSKSIDSGYWLKEFAKFRPIDFHIFLKDSDLIAQAVIDFNNDWNGFMNASEFEKSFETARHGKKDWNSRKLEAGPNIYGWVAREDDYNCGGPIGEYLRNKGRLRTVSDIVQEASESRNSIVTNLTNEIEITNENLDKMQYKYNEKTMSLSRMLEEKDKLHNAFEEESRNMQRRARNEVRRILDEQEKLSSELEEKRRKLDSWSRDLNKREVLTDQERQKLEEEKKKKDLRNESLLLASKEQQIADQNVLKLVEEQKREKEEAYNKILQLEKQLDAKQKLEMEIEELKGKLQVMKHLGDEDDAAVQNKIKEMNDELQEKIDNLENMEAMNQTLIVKERQSNDELQEARKELIKGLDDMLNGPRTNIGLKRMGELDQKVFVNNCKKRYPLEEAGTRGVELCSLWQENVKNSAWHPFKVITVDDKVENIIDEEDDKLRSLKQEWGDEIYSAVVTALKEINEYNASGGYTVVELWNFKEKRKATLKEVIIYIMDHIKPLKRKRA 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3490 685 Coils Coil 605 625 - -
Ssu4g3490 685 Coils Coil 434 481 - -
Ssu4g3490 685 Coils Coil 486 534 - -
Ssu4g3490 685 Pfam XS domain 171 273 IPR005380 GO:0031047
Ssu4g3490 685 PANTHER RIBONUCLEASE P SUBUNIT P38 60 684 IPR045177 GO:0080188
Ssu4g3490 685 Coils Coil 306 326 - -
Ssu4g3490 685 Coils Coil 397 422 - -
Ssu4g3490 685 PANTHER FACTOR OF DNA METHYLATION 1-RELATED 60 684 - -
Ssu4g3490 685 Coils Coil 334 390 - -
Ssu4g3490 685 Gene3D XS domain 167 328 IPR038588 -
Ssu4g3490 685 Pfam XS zinc finger domain 99 141 IPR005381 GO:0031047
Ssu4g3490 685 CDD RRM_like_XS 174 272 IPR005380 GO:0031047
Ssu4g3490 685 Pfam XH domain 553 683 IPR005379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3490 Ssu-Chr4 85838442 85844010 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3490 - - gmx:100798940 1142.49