Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3488 ATGGAGGTTCCGAGTTCCTGGGATGCCCTTCGCAAACAGGCGAGAAAACTTGAAGCTCAGTTGGATGAGCAGATGAATTCTTATCGTAAATTGGTTTCTGCTAATGTTTCTACAAAAGCTGACACTACAGGGAGCGATCTAGAGTCTTGGATTGAGCGATTACTAAAACAACTCCAACAAGTAAACTCACAGATGCAAGCTTGGGTATCATCCGGTGGTTCAGAAATGGTTTCTCATACGTTGACTAGACACCAAGAAATTCTTCAAGATCTCACCCAGGAGTTTTATCGGCTTCGCTCAAGTCTTATAGCTAAGCAAGAACATGCTTCACTGCTAGAGgattttaaagaatttgatcGGACAAGATTAGACTTGGAACAAGGTGTAGACTCTGAACAGCATGCACTCCTAAAAGAGCGTGCATCTATCAGCCGAAGTACAGGACATGTCAATGACACTGTTGTTTCACAAGCACAAGCAACACTAGGAGCACTTGTCTTCCAACGTTCAACATTTGGTGGTATCAATTCAAAGCTTGGTAATGTGAGCAGTCGCCTCCCAACGGTAAATAACATACTTTCggcaataaagagaaaaaagtcaATGGATAGCATTATACTTTCCCTTGTTGCGGCCGTATGCACGTTTCTCATTTTCATCTATTGGCTATCCAAGTGA 678 0.4071 MEVPSSWDALRKQARKLEAQLDEQMNSYRKLVSANVSTKADTTGSDLESWIERLLKQLQQVNSQMQAWVSSGGSEMVSHTLTRHQEILQDLTQEFYRLRSSLIAKQEHASLLEDFKEFDRTRLDLEQGVDSEQHALLKERASISRSTGHVNDTVVSQAQATLGALVFQRSTFGGINSKLGNVSSRLPTVNNILSAIKRKKSMDSIILSLVAAVCTFLIFIYWLSK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3488 225 Pfam Snare region anchored in the vesicle membrane C-terminus 135 200 - -
Ssu4g3488 225 PANTHER GOS-28 SNARE- RELATED 1 225 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016021
Ssu4g3488 225 PANTHER GOLGI SNAP RECEPTOR COMPLEX MEMBER 1 1 225 - -
Ssu4g3488 225 Coils Coil 51 71 - -
Ssu4g3488 225 PIRSF Golgi_SNARE 1 224 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016021
Ssu4g3488 225 Coils Coil 7 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3488 Ssu-Chr4 85790138 85794947 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3488 K08495 - gmx:100797885 397.512