LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3483	ATGCTGTGCAGGAAGAGCTCCAAAAACGGCGTCGGTTCGGGATCGGTGCCGGTGTACCTTAACGTCTACGATCTAACACCCATCAACGGTTACGCTTACTGGTTCGGCCTCGGAGTGTACCATTCCGGCGTGCAAGTTCACGGCGTGGAGTTCGCGTTCGGGGCTCACGAGTACTCGTCGACGGGGATATTCGAAGGGGAACCGAAGAGGTGCGAAGGGTTCACGTTCAGGAAGACCATTCTCGTCGGAAAAACCGATATGGGGCCCGGTGAGGTTAGGGCGGTGATGGAAGAACTTGCTGCTGAGTATAGAGGGAATGCTTACAATCTCATCACGAAGAATTGCAACCATTTTTGCAACGATGCTTGTCTTAGACTCACCGGGAATGCTATTCCAAGTTGGGTCAATCGTCTTGCCCGAATTGGATTTTTGTGCAATTGCGTACTTCCTGTGACATTGAACTCAACAAAAGTTAGGCATCACAGGATAGAAGACAAGCAATGTGAAGGAGAGAAGCAAGCATTAGCGAGTGAGCCCAACAAGCTTAGTGCTTCAAATTCAACATCGTCGAACTCATCTTCCCCTGCTGGAATGCGCAGGGGAAGGAGTAGAACAAGACGTGCCCTTCCTCCATCTTCTCCTTTGATTATTGGGTCTTCTTCATCTTGA	669	0.5007	MLCRKSSKNGVGSGSVPVYLNVYDLTPINGYAYWFGLGVYHSGVQVHGVEFAFGAHEYSSTGIFEGEPKRCEGFTFRKTILVGKTDMGPGEVRAVMEELAAEYRGNAYNLITKNCNHFCNDACLRLTGNAIPSWVNRLARIGFLCNCVLPVTLNSTKVRHHRIEDKQCEGEKQALASEPNKLSASNSTSSNSSSPAGMRRGRSRTRRALPPSSPLIIGSSSS	222

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3483	222	Gene3D	PPPDE domains	13	169	IPR042266	-
	Ssu4g3483	222	MobiDBLite	consensus disorder prediction	178	199	-	-
	Ssu4g3483	222	ProSiteProfiles	PPPDE domain profile.	16	153	IPR008580	GO:0008233
	Ssu4g3483	222	SMART	DUF862_2a	16	154	IPR008580	GO:0008233
	Ssu4g3483	222	PANTHER	F23A5.4 PROTEIN	5	222	-	-
	Ssu4g3483	222	Pfam	PPPDE putative peptidase domain	17	150	IPR008580	GO:0008233
	Ssu4g3483	222	MobiDBLite	consensus disorder prediction	169	222	-	-
	Ssu4g3483	222	PANTHER	DESUMOYLATING ISOPEPTIDASE	5	222	IPR008580	GO:0008233

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g3483	Ssu-Chr4	85754391	85755990	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3483	K22763		-	gmx:100796813	382.489

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g3483	4	85754391	85755990	Ssu4g3483	4	85754391	85755990	ECH