Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3482 ATGCGACGCTCTGCAGCCAAAAAGACGGGTCAGTCCAATTCCACTCCCAACGCCGCCGATCTCTTCCGCTCCGCTTCAAGTAAGGCAAGCTCGAAGGAATCAGAACGAATTGATAGTCTATTTTATTCATATGCCAATGGGTCTACTGGGTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGGTTGATCATACAGATGTGAGGGTTTTGATGCTTGCGTGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGgatGAGTGGAGGAGAGGCTTAAAAGCATTAAGGGCTGATACGGTAAGTAAATTGAAGAAGGCACTTCCAGACCTAGAAAAAGAGGTCAGGAGGTCATCAAACTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTTTAACAGAGGAGAAACAGAAAAGCATTGATATAGAGAGCATTTGTGAATTACTTACTCTTGTTTTGGGTTCAACATTTCCTGCCCAAGTCAACTCATTTGTGGAATATTTGAAGACGCAAAATGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTTTCCGCTTTTGCAATGAGATAAGTTTTCTGACCCTTAATGACTATGATCCTGAACTTGCCTGGCCCTTGATCCTCGATAATTTCGTTGAATGGGTGCGAGAAAAGCTAAAATTGTCTGATTAG 693 0.4113 MRRSAAKKTGQSNSTPNAADLFRSASSKASSKESERIDSLFYSYANGSTGLIDPEGIETLCADMEVDHTDVRVLMLAWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRSSNFADFYSYAFQYCLTEEKQKSIDIESICELLTLVLGSTFPAQVNSFVEYLKTQNDYKVINMDQWMGFFRFCNEISFLTLNDYDPELAWPLILDNFVEWVREKLKLSD 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3482 230 Coils Coil 229 230 - -
Ssu4g3482 230 Gene3D - 30 120 - -
Ssu4g3482 230 Pfam Cullin binding 107 221 IPR005176 -
Ssu4g3482 230 PANTHER RP42 RELATED 1 225 IPR014764 -
Ssu4g3482 230 ProSiteProfiles DCUN1 domain profile. 32 223 IPR005176 -
Ssu4g3482 230 MobiDBLite consensus disorder prediction 7 28 - -
Ssu4g3482 230 Gene3D Cullin, PONY binding domain 121 228 IPR042460 -
Ssu4g3482 230 SUPERFAMILY EF-hand 24 193 IPR011992 -
Ssu4g3482 230 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 1 225 - -
Ssu4g3482 230 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3482 Ssu-Chr4 85739331 85743586 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3482 K17824 - gmx:100776788 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3482 4 85739331 85743586 Ssu4g3482 4 85739331 85743586 ECH