Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3479 ATGTCAGAAGATTTACACTTACCCGAGGAGTGCTGGGAATTGGTATTGAAATTCCTCAAAAGCCCCAAATCCCATTCCTTAGAACCTCTCTCCCTTCTCTCCAAACAATTCCTCTCCATCACCAACCGCATCCGAACCTCCCTCACCATATGCAACCCAACGCTCCCCTTTCTCCCTCGCCTCCTCCTCAGGTTCCCCTCCCTCACCTCCCTCGACCTCACGCGCCTCCACCACGGGCACCTCGACGCGCTCCTGAACCAAATCTCACGCTCCTCGTTGCCCCTCCAATCGCTCAACCTCTCCGGCCACCCCACGATCCCCGCAAACGGGTTCCGAGCTTTGTCCCTAAAGAGCGCAACTTTGAAGTCCCTCACGTGCGCCCACATGGGTTCTCTGAAAGACGCCGATCTGCTCCTCATCGCCGAGTGTCTCCCTTTCCTCGAACACCTCGACCTTAGTTTCCCCGAAGACACCGACGGGTCCGCCGGTCCCGTCTCCGACGTCGGCGTGACAGCTCTCTCGCTGGCCCTCCCCGAACTCCGCGGGGTTAACCTCTCTGGCAATTTCCTCCTCAACGACGCTTCGATTTTCAGCCTCTGCAGAAACTGCGAGTCTCTCGAGGAGCTCGCGATCTTCGAGTGCCACTTCATCACGCAACGTGGCATCGCCTCCGCGATCCGGGAGAGACCGTGTTTGCGTTCATTTTCGGTGAGCGGCTTCGGGTGTGGAACCAAGAAAGGGGATTTTTCGAGACCCTGTGTTACCTCTGACTTCATTGCCGCGCTGGTGAGTTTGAAGAGCTTGACTTGTCTCGATTTGTCGTGTTCTTCCATCTCCGATGAGTTGCTGTGCTGTGTCGCGGAGGAGGGGATTCCTTTGAGGAAGCTTGTCCTGCAAGGTTGTTGTAACTATAGTTATGTTGGAGTGTTTTGCTTGTTGTCCACGTGTCAGTCTGTGGAGCATTTGGATATCCAGAACGCTGAGTTTCTGTGTGATCAGCGTGTGGAGGAGTTGTGTGAGTTTCTTGGGAATTTGGTGTCTATAAATGTTAGCGGTTGTAGGACGTTGACTGATTCGGCGTTTTTTGCACTCGTTAGGAAGTGTCCTTGTTGA 1113 0.5445 MSEDLHLPEECWELVLKFLKSPKSHSLEPLSLLSKQFLSITNRIRTSLTICNPTLPFLPRLLLRFPSLTSLDLTRLHHGHLDALLNQISRSSLPLQSLNLSGHPTIPANGFRALSLKSATLKSLTCAHMGSLKDADLLLIAECLPFLEHLDLSFPEDTDGSAGPVSDVGVTALSLALPELRGVNLSGNFLLNDASIFSLCRNCESLEELAIFECHFITQRGIASAIRERPCLRSFSVSGFGCGTKKGDFSRPCVTSDFIAALVSLKSLTCLDLSCSSISDELLCCVAEEGIPLRKLVLQGCCNYSYVGVFCLLSTCQSVEHLDIQNAEFLCDQRVEELCEFLGNLVSINVSGCRTLTDSAFFALVRKCPC 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3479 370 Gene3D Ribonuclease Inhibitor 10 370 IPR032675 -
Ssu4g3479 370 PANTHER NODULIN-LIKE PROTEIN 1 232 - -
Ssu4g3479 370 SUPERFAMILY RNI-like 54 365 - -
Ssu4g3479 370 SMART LRR_CC_2 177 202 IPR006553 -
Ssu4g3479 370 SMART LRR_CC_2 92 117 IPR006553 -
Ssu4g3479 370 SMART LRR_CC_2 342 367 IPR006553 -
Ssu4g3479 370 SMART LRR_CC_2 203 228 IPR006553 -
Ssu4g3479 370 PANTHER UNCHARACTERIZED 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3479 Ssu-Chr4 85676283 85677395 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3479 K10268 - gmx:100819538 576.244