Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3478 ATGGGGGCAACAGATGTTGGGAAAAAGGGGGTTCACGATAATGCTTTGGTGggtgatgttgttgttgtgaagTCTCAAGTGAAGTCTCTCTATTTGGGAAGGAATTCGTTGTTGGGAGATGAAAGCGTTGAAATGTTTGCTTCTGTTTGCCCCGGTTTGGAGGTACTCGATTTGAGCTCTTGCTGTGGGATATCATCTGAAGGCGTTGTCGAGGTTTTAAGGAGGTGCTGCGAGGTTAGGCATTTGAGCTTGGCTTTCTGTTCGGGAGTGAAGTTAACTGGGTTGAGCTTTGAAGTTCCGAGACTTGAGGAGCTGAACTTGTCACGGTCAGGGGTTGATGATGAGGCGCTTTCTGTGATCTCAAAGTGTTGTCGCGGCGGGCTCGTGCATTTGGACTTGGAAAATTGCTCTCGTGTTACGGCCGAGGGGGTGAGGCATGTGGTGGTGTACTGCACGCGATTGAGAGAGATTAATTTGGTGTCGTGTTGTGGAGTGGCAGCTAGTGTTGTTCCTTGGATGGTGTTTTCGAGGCCGTCGTTGAGAAGGATAATGGCTCCCCCGAGTTTTGATCTCAGGGATGGCCAGAGGGAACTCCTATTGCGTCATGGATGCCTTGTTTGCTAG 624 0.484 MGATDVGKKGVHDNALVGDVVVVKSQVKSLYLGRNSLLGDESVEMFASVCPGLEVLDLSSCCGISSEGVVEVLRRCCEVRHLSLAFCSGVKLTGLSFEVPRLEELNLSRSGVDDEALSVISKCCRGGLVHLDLENCSRVTAEGVRHVVVYCTRLREINLVSCCGVAASVVPWMVFSRPSLRRIMAPPSFDLRDGQRELLLRHGCLVC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3478 207 Pfam Leucine Rich repeat 101 120 IPR001611 GO:0005515
Ssu4g3478 207 Pfam Leucine Rich repeat 53 70 IPR001611 GO:0005515
Ssu4g3478 207 Gene3D Ribonuclease Inhibitor 95 184 IPR032675 -
Ssu4g3478 207 Gene3D Ribonuclease Inhibitor 7 94 IPR032675 -
Ssu4g3478 207 PANTHER F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17 19 190 - -
Ssu4g3478 207 SUPERFAMILY RNI-like 26 183 - -
Ssu4g3478 207 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 19 190 - -
Ssu4g3478 207 SMART LRR_CC_2 125 150 IPR006553 -
Ssu4g3478 207 SMART LRR_CC_2 99 123 IPR006553 -
Ssu4g3478 207 SMART LRR_CC_2 24 49 IPR006553 -
Ssu4g3478 207 SMART LRR_CC_2 50 75 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3478 Ssu-Chr4 85675648 85676271 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3478 K10268 - gmx:100819538 315.464