Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3463 ATGCTTACAATGGAGAATAAATCCCAAAACACCTTAGCTAGCAATGTACCATCAAATCAAGTTGGCTCTAGCAATAAACCTTCCGATCAAGgACTTGTTTTGCAGCCTCAAGTTCATAATCTTGGGCAACAACATTCTATTCCTTTGCCTAGTCAGCTCCAGCCACATCAGCAGCTTATATCTCAAAACATTCAAAATAATGTTGCATCTCAACCTAACCTTCCACCTGTATCTAGTCTAGCCCAGACTTCCAGCCAAAATATTGTCCAGAATTCCAACATACAGAATATACCTGGGCCAAATTCAGTTGGGAGCACTATTAGCCAAAATTCCAACTTACAGAATATGTTTCCTGGTTCTCAGAGACAAATGTCAGGAAGACAGCAGATTGTTCCCCCACAGCAACAGCTGCAATCACACAATCCACAACAATATCTTTACCAACAGCAGCTTTTGAAGCAGAAGCTCCAGCTGCAATCTCAGAtgcagcagcaacaacaacaaaaccttCTGCAACCAAATCAGTTGCTATCTTCTCAACAATCTGTTATGCAAACTTCATCTGTTATGCAACCTTCCATGATGCAAACGTCTTCTCTATCTAGCCTTCCACAGAATCAGCAGTCTACTAATGTTCAACAGTCAACGCAGTCCACGCCTCAGCAACATTCACAAGTTATCAGGCATCAGCAACAACATACTTCTATTGTACATCAGCAACAAACACCAGTGACTCAACAGCCAATCTTGCCtgcacaacagcaacaacaacttatGGGGCCTCAGTCAAATACAACAAACATGCAACGTGCACAGATGCTTGGGCAACAGAACAATGTTGGTGATATACAACAATCACAGAGGATGCTTTCAGCACAGAATAATCTTACAAACCTGCAACAGAGACAGCAACAGTTAATAAATCAGCAAAACAATCTAgcaaatatacatcaacaacAATTGGGAAATAATGGCCCTGGGTTACAGCAGCAACATATGCTTGGACCTGAATCTGGCAACACAGACATGCAAACAAGTCATCACTCCACACACATATTGCAACAACCAAAGGTTCCAATGCAGCAAcaatcacaacaaaatacatcaAGTTTGTTGCTACCTCATGCACAACAGTCACAGCCATTGGGTTCACAACAGCAATTAATACCACATATTCACACTCAGCCTGCACAGTTGCAACAGCAATTGGGTTTGCAGCAGCAGTCAAATCCCTCACAACGAGATATGCAACAAAGAATTCAAGCATCAGGGTCCTTACTTCAACAACAAAATGTTCTTGATCAACCAAAACATTTATATCAATCTCAAAGAACTCTTCCAGAAGCATCATCAACTTCTCTGGATTCTACAGCACAGACTGCACAACCAAGTGGGGTTGATTGGCAAGAAGAAGTGTACCAGAAGCTCCAAACCATGAAAGAAAGTTACTTGCCAGAGATGAATgaaatgtaccaaaaaattgCTAATAAACTTCAGCAGCATGATTCTTTTCCCCAACAGCCGAAGTCAGATCAGATTGAAAAGCTGAGGGCATACAAAGTGATGTTGGAGCGTATGATGACACTCCTACAGATTCCCAAGAACAACATTTTGCCTAATTTCAAGGAAAAACTGGGATCATATGAGAAGCAGATTGtaaatcttataaattcaaatagaCCCAGGAAAGGCATGTCTTCAGTGCAGCTAGGACAGCTTCCCCCAACTCATCTGTCCTCCATGCAACAGCCACAGTCCCAAGTTACTCAAGTACAGTCTCATGAAAATCAAATGAACTCTCAGTTGCAGTCAACAAAATTACAAGCTTCTGTACCAACCATGCTGCAGAATAATATTGCAAGCTTGCATCAAAATTCTTTGTCTGGTGTATCAACAGGACAACAGAATATGATGAATTCCATGCAACCTGGAACTAATTTAGATTCTGGACAAGGAAATTCTGTGAACTCCCTTCAACAGGTTCCAATGAGCTCCCTCCAACAAAACCCTGTTAGTACTCCTCAACAGACTAACATTAATTTCTTACCGTCGCAAGGTGGGGCGAATGTGATTCAACCAAATGCCCTTCAGTCAGGTTCCAGTGCACTACAACACCAACTGAAACATCAGCAGGAACAACAGATGCTGCAGAGTCAACAATTCAAACAACATCAGCAGCGACAATTGACGCAGAGGCAGCTCCTgcagcagcagcaacaacaCCATCCAGCAAAGCCACATCTATCTGCACAATTGCAGACACATCAAATGCCCCAGCTTCACCAAATGAATgatataaatgatataaaaatgcGACAAGGAATGGGTGTTAAGCCAGGGGTCTTTCAGCAACATCCTACATCAGATCAACACTCAGCATATTCCCATCAACAACTGAAACAAGGGAGTGCATTTCCTGTTTCTTCACCCCAACTCCTTCAGGCTGCATCTCCTCAAATTCAGCAACACTCATCTCCCCAGGTTGACCAACAAAATCATCTCCCATCTAAAACAAAAGTTGCAACTCCTCTGCAATCTTCTAATTCACCCTTTGTGGGACCTACCCCTTCACCTCCTTTGGCTCCGTCTCCTATGCCAGGAGAATCTGAGAAGCCCATTCCTTGTGTTTCATCAATATCTAATGCTGCAAATATTGGACATCAACAAACAGGGGGTGCAGTAGCACCAGCTCAATCCCTTGCTATTGGGACTCCTGGGATATCAGCCTCTCCCTTATTAGCAGAATTCAGTGGTCCAGATGGTGCGCATGGTAATGCTTTGGCTGCCACTTCTGGAAAGTCAACTGTTACAGAGCAGCCTCTTGAACGCCTCATTAATGTGGTGAAATTAATGTCACCTAAAACATTAAGTGCTGCGGTTAGGGATATTGGTTCAGTTGTCAGCATGAACGATAGAATAGCAGGATCAGCTCCAGGTAATGGATCCAGAGCAGCTGTTGGTGAGGATTTGGTTTCCATGACCAATTGTCGTCTTCAGGCTAGAAATTTCATTACTCAAGATGGTTCCAATGGAATTAAGAGGATGAAACGTTACACCAGTGCTATACCCTTGAATGTTGTATCATCTGCTGGTAGCATGAATGATAGTATCAAGCAGATAACTGCTTCAGAGGCTTCTGATCTAGAGTCAACTGCAACATCCGGTGTCAAGAAACCAAAGATTGAgGTTAATCATGCCCTTTTGGAAGAAATAAGGGAGATTAATCACCAACTTATTGACACAGTTGTAGACATAAGCAATGAAGATGTTGATCCAACAGCTGCTGTTGCTGCTGCTGAAGGGGCAGAAGGGATCATTGTCAAATGCTCTTTCATTGCCGTGGCTCTCAGCCCTAGCTTAAAATCCCAATATGCTTCAGCGCAGATGTCACCTATTCAGCCCCTGCTGTTGCTGGTTCCTGCAAATTATCCTAATTGTTCTCCCATACTCCTAGACAAATTTCCAGTTGAATCCAGTAAGGAGAATGAAGATCTTTCAGTGAAGGCAAAGTCAAGGTTTAGTACATCTTTACGCAGTTTATCACAACCTATGTCACTTGGGCAGATAGCAAGGACTTGGGATGTTTGTGCTCGCAGTGTTATTTCTGAGCATGCACAACAGAGTGGTGGAGGAAGCTTCAGCTCTAAGTATGGAACTTGGGAGAATTGCTTGACCTCCAAGTAA 3684 0.4118 MLTMENKSQNTLASNVPSNQVGSSNKPSDQGLVLQPQVHNLGQQHSIPLPSQLQPHQQLISQNIQNNVASQPNLPPVSSLAQTSSQNIVQNSNIQNIPGPNSVGSTISQNSNLQNMFPGSQRQMSGRQQIVPPQQQLQSHNPQQYLYQQQLLKQKLQLQSQMQQQQQQNLLQPNQLLSSQQSVMQTSSVMQPSMMQTSSLSSLPQNQQSTNVQQSTQSTPQQHSQVIRHQQQHTSIVHQQQTPVTQQPILPAQQQQQLMGPQSNTTNMQRAQMLGQQNNVGDIQQSQRMLSAQNNLTNLQQRQQQLINQQNNLANIHQQQLGNNGPGLQQQHMLGPESGNTDMQTSHHSTHILQQPKVPMQQQSQQNTSSLLLPHAQQSQPLGSQQQLIPHIHTQPAQLQQQLGLQQQSNPSQRDMQQRIQASGSLLQQQNVLDQPKHLYQSQRTLPEASSTSLDSTAQTAQPSGVDWQEEVYQKLQTMKESYLPEMNEMYQKIANKLQQHDSFPQQPKSDQIEKLRAYKVMLERMMTLLQIPKNNILPNFKEKLGSYEKQIVNLINSNRPRKGMSSVQLGQLPPTHLSSMQQPQSQVTQVQSHENQMNSQLQSTKLQASVPTMLQNNIASLHQNSLSGVSTGQQNMMNSMQPGTNLDSGQGNSVNSLQQVPMSSLQQNPVSTPQQTNINFLPSQGGANVIQPNALQSGSSALQHQLKHQQEQQMLQSQQFKQHQQRQLTQRQLLQQQQQHHPAKPHLSAQLQTHQMPQLHQMNDINDIKMRQGMGVKPGVFQQHPTSDQHSAYSHQQLKQGSAFPVSSPQLLQAASPQIQQHSSPQVDQQNHLPSKTKVATPLQSSNSPFVGPTPSPPLAPSPMPGESEKPIPCVSSISNAANIGHQQTGGAVAPAQSLAIGTPGISASPLLAEFSGPDGAHGNALAATSGKSTVTEQPLERLINVVKLMSPKTLSAAVRDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGSNGIKRMKRYTSAIPLNVVSSAGSMNDSIKQITASEASDLESTATSGVKKPKIEVNHALLEEIREINHQLIDTVVDISNEDVDPTAAVAAAEGAEGIIVKCSFIAVALSPSLKSQYASAQMSPIQPLLLLVPANYPNCSPILLDKFPVESSKENEDLSVKAKSRFSTSLRSLSQPMSLGQIARTWDVCARSVISEHAQQSGGGSFSSKYGTWENCLTSK 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3463 1227 PANTHER OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED 1 1225 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 92 140 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 182 240 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 852 869 - -
Ssu4g3463 1227 Coils Coil 148 168 - -
Ssu4g3463 1227 Coils Coil 289 319 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 778 875 - -
Ssu4g3463 1227 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 1 1225 IPR044661 GO:0003713|GO:0031490
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 1 31 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 783 851 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 560 607 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 442 467 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 629 755 - -
Ssu4g3463 1227 MobiDBLite consensus disorder prediction 319 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3463 Ssu-Chr4 85383498 85394764 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3463 K14972 - gmx:100805336 1784.62