Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu4g3462 | ATGGATTGGTTCTCCTGGCTTTCCAAAACAGGCCTTGAGCCAACCTTGGTGTATGAGTATGGCCTTACTTTTGCTCACAATGAGCTTGAAGAAGAAGACATAATCTACTTCAACCATGAGTTTCTCCAAAGCATGGGCATCTCCATAGCCAAGCACAGGCTAGAGATTCTCAAGCTTGCAAGGAAAGTGAAGGGAAAGAGGCCACCACGCCCTGTGGCGAGGCTCATGGTGGCGATCAAGAGGACAAAGAGGTGCCTAGCCAATTACGTTCGCACGTTCATTAGCTCATGTGAAGAAGAATCATCAGCACTTGTTGTGGTGCCATCATCAAGGACAAGGCCTAGTAGTGGTTATAGATGGAAGAGTCATGTGATGAAGAGGAACAAAAAGTTGATGGTGGCTAAGCAAGAGAGGCTCTTGCTCACAAATGGAAGTCCTACTGTGGTTCCTGCTCTGCCTGGTCTTGATGGTTTTACTAGTCCTATGGTTTACCATTTCCAAAACGAGGAAAAAATGGAaggagatgatgatgatgggtACTGGTCATCAGCTGCTACTGAAGAAATCAGGTGGGATACCATGTTCCAGGATCTAAAGCCAAATTGA | 606 | 0.4455 | MDWFSWLSKTGLEPTLVYEYGLTFAHNELEEEDIIYFNHEFLQSMGISIAKHRLEILKLARKVKGKRPPRPVARLMVAIKRTKRCLANYVRTFISSCEEESSALVVVPSSRTRPSSGYRWKSHVMKRNKKLMVAKQERLLLTNGSPTVVPALPGLDGFTSPMVYHFQNEEKMEGDDDDGYWSSAATEEIRWDTMFQDLKPN | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu4g3462 | 201 | CDD | SAM_superfamily | 2 | 62 | - | - | |
| Ssu4g3462 | 201 | Pfam | SAM domain (Sterile alpha motif) | 6 | 62 | IPR001660 | GO:0005515 | |
| Ssu4g3462 | 201 | SUPERFAMILY | SAM/Pointed domain | 5 | 68 | IPR013761 | - | |
| Ssu4g3462 | 201 | PANTHER | OSJNBA0033G05.11 PROTEIN | 1 | 201 | - | - | |
| Ssu4g3462 | 201 | PANTHER | OSJNBA0033G05.11 PROTEIN | 1 | 201 | - | - | |
| Ssu4g3462 | 201 | Gene3D | - | 1 | 68 | IPR013761 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu4g3462 | Ssu-Chr4 | 85379097 | 85379702 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu4g3462 | - | - | pvu:PHAVU_010G157800g | 341.658 |
Event-related genes