Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3460 ATGGGGGGAGCGTGTTCTAGGAAGCAGGACCAGGACAATGAAGATAGTCTTACCATAGGACTATCACGAAGATATTGCAAATGTGGGAGTTTGAAATGGTGGACATCCTCTTTTTCTTATCCATCTGTAGATTTTCACTCACGAAAAGGAGAATGTTCATCACTGTTGGACTTGTGCATCCAGAAAATAAATGAGGATATTGATAAATATGACACATTTTCTATGCTCCCACGGGATGTAAGTcagctaatttttaataatttggttTACTCCCGACGTCTAACCAGTGCTTCCCTAGAAGCTTTTCGAGATTGTGCTCTCCAgGATCTTTACTTGGGAGAATATGATGGTGTTAATGATAATTGGATGGACGTCATCTCATCCCAGGGTTCATCTTTACTTTCTGTAGATCTTTCTGGGTCTGATGTCAGTGATTTTGGGCTGACTTACCTTAAAGATTGTAAAAGTCTCATGTCCTTAAATCTAAATTACTGTGACCAAATTTCAGATCGTGGACTAGAGTGTGTCAGTgGTTTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAATGATTCAATTTCTGCTCAAGGAATGAGTACCTTTTCCAGTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTTCATCTTCGAGGTTTGACCAAGTTGGAATCACTCAATCTGAAGTGGTGTAATTGCATAACAGATTGTGATATGAAACCTCTTTCAGAGCTTGCAAGCCTGAAAAGTCTAGAGATTTCTTCCAGTAAAGTCACTGATTTTGGCATCAGTTTTCTAAAAGGGTTACAGAAGCTTGCCTTGTTAAATTTGGAAGGGTGCCTCGTAACAACTACATGCTTGGATTCTCTTGCAGAGCTTCCTGCACTGTCAAACTTGAATCTTAATAGATGTAATCTTTCTGACAATGGATGCAAAAAATTTTCACGACTGGAAAATTTGAAAGTGTTAAACTTGGGATTTAATGTCATAACAGATGCATGTTTAGTTCACTTGAAAGGATTGACAAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGATTGGTCAATTTGGCTGGCCATATGCACTTGAACTGCTTGGAATTGTCCGATACAGAAGTTGGAAGCAATGGGCTCCACCATTTATCGGGATTGTCTAGTCTGCAGAAAATAAATCTGTCGTTTACCATGGTTAGTGATAGTGGTTTAAGGAAATTGTGTGGACTCTCATCTCTGAAGTCACTTAATTTGGATGCTTACCAAATTACTGATGCTGGACTGGCAAACCTTACGAGTTTGACTGGGCTCACTGACCTGGATTTGTTTGGTGCACAAATCACAGATTTTGGGACAAACTGTTTGAAAAAATTTAAGAACCTGAGGTCCTTGGAAATATGCAGTGGAGGATTGACTGATGCTGGTgtgaaaaatatcaaagagCTTTCTTCTCTAGTGTGCTTAAATTTGTCGCAAAATAGCAACCTTACAGACAAAACCCTGGAGTTAATTTCTGGGCTTACTGGGTTGATTTCTTTGAATGTTTCAAATTCTCGTATCACCAATGCTGGACTGCAGCATTTGAAAACACTCAAGAACCTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATCAAGAAACTGAAATCAATGCACCTCCCGAATCTTGTAAGCTTTCGGCCAGGGTAG 1734 0.3904 MGGACSRKQDQDNEDSLTIGLSRRYCKCGSLKWWTSSFSYPSVDFHSRKGECSSLLDLCIQKINEDIDKYDTFSMLPRDVSQLIFNNLVYSRRLTSASLEAFRDCALQDLYLGEYDGVNDNWMDVISSQGSSLLSVDLSGSDVSDFGLTYLKDCKSLMSLNLNYCDQISDRGLECVSGLSNLTSLSFRRNDSISAQGMSTFSSLVNLVKLDLERCPGIHGGLVHLRGLTKLESLNLKWCNCITDCDMKPLSELASLKSLEISSSKVTDFGISFLKGLQKLALLNLEGCLVTTTCLDSLAELPALSNLNLNRCNLSDNGCKKFSRLENLKVLNLGFNVITDACLVHLKGLTKLESLNLDSCKIGDEGLVNLAGHMHLNCLELSDTEVGSNGLHHLSGLSSLQKINLSFTMVSDSGLRKLCGLSSLKSLNLDAYQITDAGLANLTSLTGLTDLDLFGAQITDFGTNCLKKFKNLRSLEICSGGLTDAGVKNIKELSSLVCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSMHLPNLVSFRPG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3460 577 PANTHER UNCHARACTERIZED 2 533 - -
Ssu4g3460 577 SUPERFAMILY RNI-like 126 346 - -
Ssu4g3460 577 Pfam Leucine Rich repeat 180 201 IPR001611 GO:0005515
Ssu4g3460 577 Pfam Leucine Rich repeat 154 176 IPR001611 GO:0005515
Ssu4g3460 577 Pfam Leucine Rich repeat 229 250 IPR001611 GO:0005515
Ssu4g3460 577 Gene3D Ribonuclease Inhibitor 294 371 IPR032675 -
Ssu4g3460 577 SMART LRR_CC_2 349 373 IPR006553 -
Ssu4g3460 577 SMART LRR_CC_2 228 253 IPR006553 -
Ssu4g3460 577 SMART LRR_CC_2 542 566 IPR006553 -
Ssu4g3460 577 SMART LRR_CC_2 493 518 IPR006553 -
Ssu4g3460 577 SMART LRR_CC_2 421 445 IPR006553 -
Ssu4g3460 577 SMART LRR_CC_2 154 179 IPR006553 -
Ssu4g3460 577 SMART LRR_CC_2 180 204 IPR006553 -
Ssu4g3460 577 SMART LRR_CC_2 301 325 IPR006553 -
Ssu4g3460 577 PANTHER LEUCINE-RICH REPEAT-CONTAINING G-PROTEIN COUPLED RECEPTOR 4-LIKE 2 533 - -
Ssu4g3460 577 SUPERFAMILY RNI-like 272 566 - -
Ssu4g3460 577 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Ssu4g3460 577 Gene3D Ribonuclease Inhibitor 123 219 IPR032675 -
Ssu4g3460 577 Gene3D Ribonuclease Inhibitor 478 572 IPR032675 -
Ssu4g3460 577 Gene3D Ribonuclease Inhibitor 372 462 IPR032675 -
Ssu4g3460 577 Gene3D Ribonuclease Inhibitor 220 293 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3460 Ssu-Chr4 85300020 85311342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3460 277 504 Receptor kinase-like Gene Family AT1G75820 26.638 3.33e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3460 - - gmx:100795219 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3460 4 85300020 85311342 Ssu4g3460 4 85300020 85311342 ECH