Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3455 atgGCTGCTTCCAACTCGACCACCTACGGATCCGACCCGACAACCCCGAACACGACCTTCGTCCAAGCCGACCCGTCCAACTTCCGCGCCGTCGTCCAGAAACTCACCGGCGCCTCCGACGACCCGTCGGCCCCGAAACTCCCCCTCACTCTCCCCTCCCGGCTGGCCGCCCAGTCCCACCGCCCCGGCACCGGCACCGCCGTCGACCTCATCGGCCCAAAGAAGCCCCACTTCAAGCTCCACGAGCGCCGCAACGCCGCCGCCAAGAAGCTGGACCTCAGCGTGGGCGTCGCGGAACGCGCCATGATGATGACCAGCGTCTGCGTCTCCGTCTCGCCTTCCTCGCTGGTCCGAAACCGAACGCTGGCGGGCGAGAACATCGTGATGGCGTCTCCCGTTTCCCCACTCGAGCTTCTCGCGCGTGGGAGTCCGCGAACGCCGCacgaagaggaagaagagagagcCATAGCGGAGAAAGGGTTTTACTTGCACCCTTCCCCTCTCTCCACACCAAGGGCTTCTCAACCTCCTGAGCTATTGCCACTTTTCCCTTTGCATTCTCCCActcacaaccacaaccacaaccaccatTTCTTAACCTTAATCATTGCTagctaa 618 0.5793 MAASNSTTYGSDPTTPNTTFVQADPSNFRAVVQKLTGASDDPSAPKLPLTLPSRLAAQSHRPGTGTAVDLIGPKKPHFKLHERRNAAAKKLDLSVGVAERAMMMTSVCVSVSPSSLVRNRTLAGENIVMASPVSPLELLARGSPRTPHEEEEERAIAEKGFYLHPSPLSTPRASQPPELLPLFPLHSPTHNHNHNHHFLTLIIAS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3455 205 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g3455 205 PANTHER VQ MOTIF-CONTAINING PROTEIN 11 10 193 - -
Ssu4g3455 205 Pfam VQ motif 15 42 IPR008889 -
Ssu4g3455 205 PANTHER VQ MOTIF-CONTAINING PROTEIN 11-LIKE 10 193 IPR039611 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3455 Ssu-Chr4 85238024 85238641 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3455 - - var:108320542 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3455 4 85238024 85238641 Ssu4g3455 4 85238024 85238641 ECH