Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3454 ATGCAGCATTTGCAAAAACAGGAAACTTCAACAGATAACAGTTCCAAAAACCACGAAGATGGCGATGAGGTTGAGCAAGCTGTTAAAGGTCTTGGaaagcaatttaaatttttgaagaggagagagaggaaaTCAAATAATCTAGATGGTGCAGATTCTAGGGAGCAAAATGAATCTAGACCTGGAAATGTGAATGATGCTGCTGATAAAGTTAAACCAAACAATGATGACCTAAGTAACTCTAATGAATTAGAGAACCTACTTTCTAAAGAAGCATTTTTGCGTCTCAAAGAATCTGGAACTGGTCTTCACATGAAGTCGGTGGATGAGCTTATCAGCATGGCACACAAGTTTTATGATGAAATTGCCTTGCCAAAGCTGGCTAGGGACTTTGGATCACTTGAACTTTCTCCAGTGGATGGTCGTACGTTGACCGACTTTATGCATTTAAGAGGATTACAGATGCGATCTCTGGGTAAAGTGGTTAAACTTGCAGAGAATCTTCCACACATACAGTCCCTTTGTATTCATGAGATGATTACTCGAGCTTTCAAGCATCAACTTAAAGCAGTTATTGCCTCTGTTGACAATGTAGCTGATCTATCTGCAACCATTGCATCAACGCTGAATTTCTTACTTGGTGGGTGTCAAACAGAAGATACTGACCAAAGTTTGAGTGATGATCATAATCTCAGAATTCAGTGGTTACGTATGTTTTTGTCCAAAAGATTTGGGTGGACATTAAATGATGAATTTCAACATTTGAGGAAGTTATCGATTCTCAGAGGGCTCTGTCACAAGGTTGGATTGGAATTGCTCCCAAGAGATTATGACTTGGAGTCCCATAAGCCCTTTGGGAAAAATGATATTATCAGCCTGGTTCCTGTTTGCAAGtATGTAGGGTGCTCCTCAGTAGATGGACGCAATTTATTGGAGTCTTCCAAAATTGCTCTTGATAAAGGAAAGCTTGAGGATGCTGTAAATTTTGGAACAAAGGCATTGGCCAAGATGATGTCTGTTTGTGGTCCCTATCATCGAAATACTGCGAGTGCATATAGTCTTCTAGCTGTGGTTCTCTACCACACCGGAGATTTTAACCAGGCCACCATTTATCAGCAAAAGGCCTTGGATATAAATGAGAGGGAGCTTGGGCTTGACCACCCTGACACTATGAAAAGCTATGGGGATCTTTCTGTTTTTTATTATCGTCTGCAACACATTGAGTTGGCTCTGAAGTATGTTAATCGTGCTCTATTCCTTCTTCATTTCACATGTGGGCTGTCCCATCCAAACACAGCTGCAACGTATATAAATGTGGCTATGATGGAAGAGGGCATGGGAAATGTTCATGTGGCACTCAGATACTTGCATGAAGCTCTTAAATGCAACAAAAGATTGCTAGGAGCAGACCATATACAgACTGCCGCAAGCTATCACGCCATAGCGATAGCTCTTTCATTGATGGATGCATATTCTCTGAGTGTGCAACACGAGCAAACTACACTAAAGATACTTCAAGCAAGGCTTGGACCAGAAGATCTTCGTACACAGGATGCTTCCGCATGGCTTGaatattttgaatcaaaagcTATAGAGCAGCAAGAAGCAGCTAAAAATGGAACTCCAAAGCCTGATGCATCCATTGCAAGTAAAGGTCACCTTAGTGTGTCAGATCTCCTGGATTTTATAAGTCCTGACAATGATTCGAAAGGAAACGATGCTCAGAGGAAACAGAGGCGTGCAAAGATACTCCCAACAAGTGATAACAACCATCAAGAACGTGACGATACAATAGCTGATGAGAGCATTCTATTTGATAACTCAAAAGATGCTCCAAGTATGGTAGAAGGCAATATAGAAGAAACAAATGGCACACTTGATTCTCGAGTACCGAAAGAAAATGGTGATTTCCCTAGGTACAGGCCAGTGACAAGTGAAGTTGTTTATGAGACATCATCTGAGGAAGGTTGGCAAGAAGCCAATTCAAAAGGGCGGTCAGGAAATGCTGCTAACCGCAAGTTTGGACACAGAAAGCGACCTCTTCTATCAAAGCTCAGCGTTAATGGTTCTAATAATTCCATTTACAGGGAAGGCAGTTCTAGGAATGACATTACTTCGCCACCACAAAGAGGAGTTCCAAAAGTCATGTCGGATATGTCATCTCCATCTAGACAACCAAAAGCTCGAAACTTAACTTTGAACGAGGGTTCTTTTAATCATCCAACAAAAGCTTGTGTGTCCAAAATTTCATCTCCAGCATCTCTAAGTTCCTTGGCTTCAAAGTCTATATCTTACAAAGAAGTGGCTTTGGCACCACCAGGTACGGTTTTAAAGCCATTGTTGGAAAAGGCTGAGATGGACAGGGTTAATGCTGAAGATGAGATATGCAGCAGTCCACCTGTGACATCAATAAATGAAGGTACCTGCCAAAGTTCCATAGTTAATACAGTTTCTCAGCATGATGAAACAGAGGAAACTCATGAAATTGAACCTCAAGAAGAAATTTCTGCATCAGAACTTGAGAAGGTTTCCCTTGCTTCTGATCAGGCAAAACCTACAGAACCAAATGGCAGTAAGCTTTCAGCTGCAGCCCAACCGTTCAATCCAGGAATGTTGTCCATGTCTCATCATTTAAATTCAGTTTCCTTCACAAGCATGTATGATACAGATGTTAGTCAAGGCATGCACGTGGAGCCTGTGGTTTCCCCTGCTGTTGCTAGGGTCCCTTGTGGGCCTAGATCACCTCTATATTATAGAACCAACTATACTTTTCGCATGAAACATGGTTTTGCTAAATGCCAAACCCCTATCAGGGAAAGAAGTGAATTTGGATCTCCAAGAATAATGAATCCACATGCGCCCGAGTTTGTTCCTAGAAGTGCTTCTCAAATAGAAACCAATGATGTCAATTCAAATGTTTCTAATGAGCATAACTCTTTGTCTGAGGTAGGCATGGCAGAGAAAAATAAGCTTGAcgaaaattttgttgaaatcaAGGAAAGTCCCACAAAAAACCGTATTTCTGAATCTGAGAAGTCTGAGATAGCAAGGCAGATATTGCTTAGTTTTCTAGTGAAATCTGTCAAGGAAAATATTGATTCTGTGGGTGAATCTGAGGATGATGAAGGAAAAATTGAGAACTTGGAAAATTGTTCTGATGAAATAGCCAAAGACAGTGCTGTCACAAACATTATGTAtggaaatgaagaaaagaataagacaGTGCCTCATTCCAGTGATAGCGATGAGCAAGAAAAATTAGGTGTAACTGAGAAAAACAATGGAGATGGTGAAGGGTTTATAGTTGTCTCAAAGAGGAGAAAAAACAGGCAGAAGATCACAAATGGAGTCACAGAATTGTACAACCAACAACAGTCCATCTGTGCTTCAGTTCGTTGA 3399 0.3998 MQHLQKQETSTDNSSKNHEDGDEVEQAVKGLGKQFKFLKRRERKSNNLDGADSREQNESRPGNVNDAADKVKPNNDDLSNSNELENLLSKEAFLRLKESGTGLHMKSVDELISMAHKFYDEIALPKLARDFGSLELSPVDGRTLTDFMHLRGLQMRSLGKVVKLAENLPHIQSLCIHEMITRAFKHQLKAVIASVDNVADLSATIASTLNFLLGGCQTEDTDQSLSDDHNLRIQWLRMFLSKRFGWTLNDEFQHLRKLSILRGLCHKVGLELLPRDYDLESHKPFGKNDIISLVPVCKYVGCSSVDGRNLLESSKIALDKGKLEDAVNFGTKALAKMMSVCGPYHRNTASAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFYYRLQHIELALKYVNRALFLLHFTCGLSHPNTAATYINVAMMEEGMGNVHVALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSLMDAYSLSVQHEQTTLKILQARLGPEDLRTQDASAWLEYFESKAIEQQEAAKNGTPKPDASIASKGHLSVSDLLDFISPDNDSKGNDAQRKQRRAKILPTSDNNHQERDDTIADESILFDNSKDAPSMVEGNIEETNGTLDSRVPKENGDFPRYRPVTSEVVYETSSEEGWQEANSKGRSGNAANRKFGHRKRPLLSKLSVNGSNNSIYREGSSRNDITSPPQRGVPKVMSDMSSPSRQPKARNLTLNEGSFNHPTKACVSKISSPASLSSLASKSISYKEVALAPPGTVLKPLLEKAEMDRVNAEDEICSSPPVTSINEGTCQSSIVNTVSQHDETEETHEIEPQEEISASELEKVSLASDQAKPTEPNGSKLSAAAQPFNPGMLSMSHHLNSVSFTSMYDTDVSQGMHVEPVVSPAVARVPCGPRSPLYYRTNYTFRMKHGFAKCQTPIRERSEFGSPRIMNPHAPEFVPRSASQIETNDVNSNVSNEHNSLSEVGMAEKNKLDENFVEIKESPTKNRISESEKSEIARQILLSFLVKSVKENIDSVGESEDDEGKIENLENCSDEIAKDSAVTNIMYGNEEKNKTVPHSSDSDEQEKLGVTEKNNGDGEGFIVVSKRRKNRQKITNGVTELYNQQQSICASVR 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 849 863 - -
Ssu4g3454 1132 Pfam Tetratricopeptide repeat 348 418 - -
Ssu4g3454 1132 Pfam Tetratricopeptide repeat 432 506 - -
Ssu4g3454 1132 SUPERFAMILY TPR-like 386 510 IPR011990 GO:0005515
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 41 56 - -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 817 864 - -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 1 82 - -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 652 668 - -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 562 601 - -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 716 736 - -
Ssu4g3454 1132 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 1129 - -
Ssu4g3454 1132 SUPERFAMILY TPR-like 315 418 IPR011990 GO:0005515
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 652 736 - -
Ssu4g3454 1132 SMART tpr_5 349 382 IPR019734 GO:0005515
Ssu4g3454 1132 SMART tpr_5 433 466 IPR019734 GO:0005515
Ssu4g3454 1132 SMART tpr_5 391 424 IPR019734 GO:0005515
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 684 707 - -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 820 837 - -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 12 29 - -
Ssu4g3454 1132 Pfam Translation initiation factor eIF3 subunit 135 136 278 IPR033646 -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 1068 1102 - -
Ssu4g3454 1132 ProSiteProfiles TPR repeat profile. 349 382 IPR019734 GO:0005515
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 570 601 - -
Ssu4g3454 1132 CDD CLU-central 138 279 IPR033646 -
Ssu4g3454 1132 MobiDBLite consensus disorder prediction 1073 1092 - -
Ssu4g3454 1132 Gene3D Tetratricopeptide repeat domain 308 551 IPR011990 GO:0005515
Ssu4g3454 1132 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 1 1129 IPR027523 GO:0006996
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3454 Ssu-Chr4 85223477 85228888 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3454 K03255 - gmx:100801625 1905.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3454 4 85223477 85228888 Ssu4g3454 4 85223477 85228888 ECH