Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3451 ATGGTGATGGTAGGTGGTTTGAAACTCCAATCTGTCACACCTTACAAAACCTTCATCGACAACCACTTGCCACTACCATCTGTCGCACCACCCACCACCGTTGTCCACGCCCAGGAGAGGAAGGAAGGTGGCAATGaagaggaagatgaagaagaagagaggagagagaggtgCGGTGAGTGGGGTGACATGTTCTCCATGTTATGTTTGGCAACTCGCTTGTCTTTTTCACTTGCAACATTCACACTTTCACTTTCTTGGTTCCCCAAGAGAATGATTTCTAACGCTCCTGCTGCTACTGTAAAGTGTTCTTCACAGTGCTTTGGAGAATCTCCAATCTCTTTGCTTGAAAGGTGCAAGTCCATGTACCAGCTAAAGCAAATTCACTCCCACACTATCAAAATGGGTCTCTCTTCAGACCCTTTATTTCGAAATAGAGTTATAGCCTTCTGTTGTGCCCATGAATCAGGGAATATGGACTATGCCCGTCAGATGTTTGACACAATCCCACACCCAAGTTTGTTCATTTGGAATACTATGATCAAGGGGTATTCTAGGATCAACCTTCCTGAGAATGGAGTTTCTATGTATCTACTAATGCTGGCTAATAACATCAAGCCTGACCGTTTTACATTTCCATTCTTGTTGAAGGGATTTACCAGGGATATGGCTTTGCAGCATGGGAAAGTGTTACTTAACCATGCAGTGAAACACGGTTTTGATTCTAATTTGTTTGTTCAAAAGGCTTACATACATATGTTTTCCTTGTGCGGGCTTGTGAATTTGGCTCACAAGGTTTTTGATATGGGTGATGCATGGGAAGTAGTTACCTGGAACATAATGCTATCTGGGTATAACAGAGTTAAGCAATTTAAGAGATCAAAGAAGCTTTTTATTGAGATGGAGAAGAGAGGAGTGTCACCCAATTCAGTTACTCTAGTTTTGATGCTTTCTGCATGCTCCAAATTGAAGGATTTAGATGGTGGCAAACACATTTATAAGTATATCAAAGAAGGTATTGTTGAACCTAATCTCATATTGGAAAATGCTTTGATTGATATGTTTGCAGCTTGTGAAGAAATGGATGAAGCACAAGAACCTGGGCACTACTACAGTTCTTATGGTGGAATCATGAGTTGA 1140 0.4 MVMVGGLKLQSVTPYKTFIDNHLPLPSVAPPTTVVHAQERKEGGNEEEDEEEERRERCGEWGDMFSMLCLATRLSFSLATFTLSLSWFPKRMISNAPAATVKCSSQCFGESPISLLERCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMDYARQMFDTIPHPSLFIWNTMIKGYSRINLPENGVSMYLLMLANNIKPDRFTFPFLLKGFTRDMALQHGKVLLNHAVKHGFDSNLFVQKAYIHMFSLCGLVNLAHKVFDMGDAWEVVTWNIMLSGYNRVKQFKRSKKLFIEMEKRGVSPNSVTLVLMLSACSKLKDLDGGKHIYKYIKEGIVEPNLILENALIDMFAACEEMDEAQEPGHYYSSYGGIMS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3451 379 TIGRFAM PPR: pentatricopeptide repeat domain 176 208 IPR002885 -
Ssu4g3451 379 TIGRFAM PPR: pentatricopeptide repeat domain 276 310 IPR002885 -
Ssu4g3451 379 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Ssu4g3451 379 Pfam PPR repeat family 275 321 IPR002885 -
Ssu4g3451 379 Pfam PPR repeat family 172 220 IPR002885 -
Ssu4g3451 379 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Ssu4g3451 379 PANTHER BNACNNG07920D PROTEIN 102 298 - -
Ssu4g3451 379 PANTHER BNACNNG07920D PROTEIN 250 366 - -
Ssu4g3451 379 Gene3D Tetratricopeptide repeat domain 110 224 IPR011990 GO:0005515
Ssu4g3451 379 PANTHER - 102 298 - -
Ssu4g3451 379 PANTHER - 250 366 - -
Ssu4g3451 379 MobiDBLite consensus disorder prediction 36 55 - -
Ssu4g3451 379 Gene3D Tetratricopeptide repeat domain 225 366 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3451 Ssu-Chr4 85171498 85175500 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3451 162 367 Glycoside Hydrolase AT3G49170 26.415 5.37e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3451 - - gmx:100801078 506.523