LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g3442	ATGGCTCTCATCGCCTCCCAACCCAAAAACCCCATTCTCCATCGCATCCCCACCCTTCATCGCCCAATTCCACGGTTGGGTAGGACCGTTCTTGGTCTTGGCTCTTTCTCTCACAATGCCATGCCCATTAAAAATGCTAACTTTAACCCAAAGACAAGCAAACTCTTCCTGAAAAACAATCCCTTTACCTACTACAATTTGGCAGTGACAGCCAAAGCCACAGCATTTGGAGAAGGTTTGGAGGCACTGAAACACAGAAAGATTTTGTTGTCAGAAGTTGAGgtgaagagagagaggagagttTTCTTTGGGAGGAAATGGAACTCTTTGGATGTTGCCACTGCCGGAATTGTGTTGGCCATGCATGTCCTCTGCCTCTTTGCTCCTTTCCATTTCAATTGGCCAGCTTTTTGGGTGGCTCTGGCTCTCTATGTTCTCACTGGCCTTTGTGGCATCACTCTTTCTTTCCACAGAAACCTTTCTCACAGGAGCTTCAAGCTTCCCAAATGGCTTGAATATTTCTTTGCCTATTGTGGGGTTCTGGCTCTTCAGGGGAACCCAATTGATTGGGTGAGCACACATAGGTACCATCACCAGTTTTGTGATTCTGAGAGAGACCCTCATAGCCCCACTGAAGGATTCTGGTTCAGCCATATGAGTTGGCTTTTTGATACCAAATCTGTCATAGAAAGGTGTGGAGAGCCAAACAATGTTGGTGATTTAGAGAAACAACCTTTCTATAGATTTCTCCGAAGCACTTACCTTGTCCATCCTTTTGCTTTGGGAGCCCTTCTATATGCTACAGGAGGACTTCCTTTCCTTGTTTGGGGAATGGGAGTGAGGATTGTTTGGGTTTATCACATAACCTGGTTTGTAAACTCAGCTTGCCATGTATGGGGGAAGCAGGCCTGGAACACCAGGGACTTATCAAGAaataattgGTGGGTGGCTTTGCTTGCATTTGGTGAGGGTTGGCACAATAACCACCATGCTTTTGAGTACTCAGCTCGACATGGCCTAGAGTGGTGGCAATTAGACATGACTTGGTATGTTGTGAGATTTCTCCAAGCTATTGGGTTGGCCACTGATGTCAAGTTACCCACGGAGAGTCAGAAGCAGAGAATGGCATTGAATAGTGACACTGTAGCCACATGA	1155	0.4528	MALIASQPKNPILHRIPTLHRPIPRLGRTVLGLGSFSHNAMPIKNANFNPKTSKLFLKNNPFTYYNLAVTAKATAFGEGLEALKHRKILLSEVEVKRERRVFFGRKWNSLDVATAGIVLAMHVLCLFAPFHFNWPAFWVALALYVLTGLCGITLSFHRNLSHRSFKLPKWLEYFFAYCGVLALQGNPIDWVSTHRYHHQFCDSERDPHSPTEGFWFSHMSWLFDTKSVIERCGEPNNVGDLEKQPFYRFLRSTYLVHPFALGALLYATGGLPFLVWGMGVRIVWVYHITWFVNSACHVWGKQAWNTRDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGLEWWQLDMTWYVVRFLQAIGLATDVKLPTESQKQRMALNSDTVAT	384

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g3442	384	PRINTS	Fatty acid desaturase family 1 signature	157	177	IPR015876	GO:0016717
	Ssu4g3442	384	PRINTS	Fatty acid desaturase family 1 signature	194	223	IPR015876	GO:0016717
	Ssu4g3442	384	PRINTS	Fatty acid desaturase family 1 signature	279	300	IPR015876	GO:0016717
	Ssu4g3442	384	PRINTS	Fatty acid desaturase family 1 signature	322	336	IPR015876	GO:0016717
	Ssu4g3442	384	PANTHER	BNAC05G37460D PROTEIN	43	379	-	-
	Ssu4g3442	384	CDD	Delta9-FADS-like	133	365	IPR015876	GO:0016717
	Ssu4g3442	384	Pfam	Fatty acid desaturase	134	353	IPR005804	GO:0006629
	Ssu4g3442	384	PANTHER	ACYL-COA DESATURASE	43	379	IPR015876	GO:0016717

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g3442	1	380	Lipid Metabolism Gene Families	AT3G15850	64.175	1.64e-176	494

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g3442	K20416		-	gmx:100786391	722.235

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g3442	4	85070054	85071676	Ssu4g3442	4	85070054	85071676	ECH