Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3436 ATGGAGACCGAACCGCAAAGTGCTGCCAAAGATGAGGTCTTATCCGTTGAGCTTTCAGCTCCTCCTGCTTGGAAGAAACTGTTCTTCCCTAAGAAAGTAGGAACGCCAAGGAAAAGTGAGATCGTATTCATAGCTCCTACTGGGGAGGAGATCACTTCCAAAAAACAATTGGAGCAGTACCTAAAGGGGCATCCCGGGAATCCTGCCATCTCGGAGTTTGACTGGGGAACTGGTGAGACCCCTAGGCGATCAGCAAGGATAAGCGAGAAGGTCAAATCAACTCCACCAGCAGAGACTGAGCCTCCAAAGAAAAGATCTCGAAAATCATCGGGTTCAAAGAAGGATAACAAAGAAACTGAACCTGCCGCCGAAGAATCCAAGCCAGATCCTGATGAAACTGATAATAACAATGAAACGAAGACTGATACAGAGGAAATTAAGAACAGTAATTCAGAAGTGGAAAATGCAATCGCTGAAAAGCCCgagggagaagaagaagcatTGCTGGCAGAGTCGGGAGAGAAATTTGCTGGGGAAGCTTTGAATACTGAGGTCACCGAAAAACCCCAAGAGGAGGCACCAATTGCATCAGAAAAGGAAAATGGCACAGTTGACAGTAAGCAGGAGATAGCAGATACTGTGATTCTTGAGGCAAATGGAGGAGCTGAGAAAGTGAACCCCAATGTTGATGAAGAGACAAATGCTAAGAAAGAAATCCCAGTAAGTGATGGAAAAAGCACCATCCAAGCTGAGGAGCAAGTAAATAAAATGGTTGACAATGGACAAGTTATTTGGAGCTGTGCTCAGTGA 810 0.4432 METEPQSAAKDEVLSVELSAPPAWKKLFFPKKVGTPRKSEIVFIAPTGEEITSKKQLEQYLKGHPGNPAISEFDWGTGETPRRSARISEKVKSTPPAETEPPKKRSRKSSGSKKDNKETEPAAEESKPDPDETDNNNETKTDTEEIKNSNSEVENAIAEKPEGEEEALLAESGEKFAGEALNTEVTEKPQEEAPIASEKENGTVDSKQEIADTVILEANGGAEKVNPNVDEETNAKKEIPVSDGKSTIQAEEQVNKMVDNGQVIWSCAQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3436 269 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 10 80 IPR001739 GO:0003677
Ssu4g3436 269 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11 9 233 - -
Ssu4g3436 269 Gene3D - 2 166 - -
Ssu4g3436 269 MobiDBLite consensus disorder prediction 96 149 - -
Ssu4g3436 269 MobiDBLite consensus disorder prediction 60 247 - -
Ssu4g3436 269 PANTHER METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 9 233 IPR039622 -
Ssu4g3436 269 Pfam Methyl-CpG binding domain 18 79 IPR001739 GO:0003677
Ssu4g3436 269 MobiDBLite consensus disorder prediction 157 172 - -
Ssu4g3436 269 SUPERFAMILY DNA-binding domain 10 104 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3436 Ssu-Chr4 84989019 84991151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3436 - - aprc:113857069 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3436 4 84989019 84991151 Ssu4g3436 4 84989019 84991151 ECH