Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3432 ATGGTGGTGTGCACAAGCAGAGGTGGGGCAATGAGTTGCTCACAAGGTTTGCTACTGCAGCCGGGGATAAGGGGAAATCTGAAGGCACCTGAAGTTGCTGTCTCGGAAGGGAAAAAGTCTAATAGGTTGTTGTTCCTCAGGGGGAGGGGTAGAAGATGGGGTTGGAGAAACAACGATCGTGACTTCCCTCCTGCTCTTTATGAATTTTTTCCTTCAGGGCTTGGGAATGCACTGATGCAGGCAAGTGAAAACATCAACAGGCTGTTTGAGAACATGAATTTGACACCTTGGTCTCTGAGTGGGTGTGTGAAAGAGAAGGATGATCATTACAAACTGCGGTACGAGATGCCAGGGATCGCCAAAGAGGACGTGAAGATCACCATTGATGATGGGGTGTTGCGAATAAAGGGAGAGCacaaggaagagaaagaagaaggggATGATGATGAGTATTGGTCATCAAGTAGTTATGGATACTATAACACAAGCCTGGTTTTGCCTGATGATGCCAGGGCTGATGACATTAAGGCAGAGTTGAAGGATGGTGTCCTAACTGTGACCATTCCTAGGACTGAGAACCTCAAAAAGGATGTCAAGCAAGTCACATTACAATGA 615 0.4504 MVVCTSRGGAMSCSQGLLLQPGIRGNLKAPEVAVSEGKKSNRLLFLRGRGRRWGWRNNDRDFPPALYEFFPSGLGNALMQASENINRLFENMNLTPWSLSGCVKEKDDHYKLRYEMPGIAKEDVKITIDDGVLRIKGEHKEEKEEGDDDEYWSSSSYGYYNTSLVLPDDARADDIKAELKDGVLTVTIPRTENLKKDVKQVTLQ 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3432 204 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 45 202 - -
Ssu4g3432 204 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 88 204 IPR002068 -
Ssu4g3432 204 Gene3D - 72 203 IPR008978 -
Ssu4g3432 204 Pfam Hsp20/alpha crystallin family 103 202 IPR002068 -
Ssu4g3432 204 CDD ACD_sHsps-like 103 190 - -
Ssu4g3432 204 PANTHER 26.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 45 202 - -
Ssu4g3432 204 SUPERFAMILY HSP20-like chaperones 90 202 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3432 Ssu-Chr4 84950740 84951859 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3432 K13993 - gmx:100787482 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3432 4 84950740 84951859 Ssu4g3432 4 84950740 84951859 ECH