Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3423 ATGTTCGTTTTTTCTGTGAAACCTTTCTTCAGCCTTCTCGTCGGCTCCCTCTTACTCCTCTTCCTTCTCGCGTTGCTATCGCCTCCTTCCCTGTTCTCCCAAAATCCCATTTCTGGGGAACCCTCATTAGGGGAGGTGGATATATGGAGTGTTCGGAGACTCGTGGAATGGAAACCTTGCAATTGGTGGCTACAAGGCCATCAAACAGCTCTACCATTAGAAACCAATGGATATATCAGAGTGGATTGCTATGGGGGCCTCAATCAGATGCGAAGAGATTTCTGTGACGGTGTGGGCATTGCTCGTCTGTTAAATGCAACCCTCGTCCTGCCAAAGTTTGAAGTGGCTTCATATTGGAATGAAACAAGCGGTTTTGCAGATGTATATGATGTAGACTACTTTATACAGCATATGAATGGCTTTGTCAAAATTGTCAAAGAGTTACCACCAGAGATTGCATCAAAAGAACCTGTTCGAGTGGACTGTAGCAAACGGAAAGGGCAATTTGATTATGTTGAAAGTGTTCTTCCATCTTTATTGAAACACAAGTACATTTCAATCACCCCAGCAATGTCCCAAAGAAGAGACAGATACCCTTTTTATGCAAAAGCTGCTCTCTGTCAAGCTTGTTACAAGGCATTACGTCTCACCAGATCCTTGGAAATGAAAGCCTCTCAACTCCTAGATGCAATACCTAAACCCTTTTTGTCTCTTCATCTTCGTTTTGAGCCCGACATGGTTGCGTACAGCCAGTGCGAGTACCCTGGCCTTTCTCCTGCTTCCATCAAAGCCATAGAAGCAGCACAAGTGGACAGAAAACCGTGGACTGGAGAGTTAGCCCGCGTTTGGAGACAGCGGGGGAAATGTCCGCTTACACCTAATGAGACAGCTTTAATACTTCAAGCTCTTTCCATCTCACCAACCACGAATATATACCTGGCAGCTGGAGATGGTTTGATGGAAATTGAAGGGTTGACAGATACCTACACTAACATAGTTACTAAGTCAAGTCTTCTCAGTGGGGAAGACTTCACAAGCATGCATGGCAATACAAAAGCTGCTTTGGATTATTATGTATCCATTAACAGTGATTCGTATATAGCCACTTATTTTGGGAACATGGATAAGATGGTTGCAGCAATGCGAGCTTTCAAAGGTTTGTATAAGACTCTATTTTTGAGCAGAAGAGGTTTTGCAGAATTAACCTCACAGGGTCTTGGGGGAAAGGAGTTGATGCAAGCCCTATGGAAGGTTCACAGAGATGATTTTGCCATGGGAAGAGGCTCTGCTCTGCCCGAGTGTTTTTGCGAATTCAAGTTGTGA 1323 0.4429 MFVFSVKPFFSLLVGSLLLLFLLALLSPPSLFSQNPISGEPSLGEVDIWSVRRLVEWKPCNWWLQGHQTALPLETNGYIRVDCYGGLNQMRRDFCDGVGIARLLNATLVLPKFEVASYWNETSGFADVYDVDYFIQHMNGFVKIVKELPPEIASKEPVRVDCSKRKGQFDYVESVLPSLLKHKYISITPAMSQRRDRYPFYAKAALCQACYKALRLTRSLEMKASQLLDAIPKPFLSLHLRFEPDMVAYSQCEYPGLSPASIKAIEAAQVDRKPWTGELARVWRQRGKCPLTPNETALILQALSISPTTNIYLAAGDGLMEIEGLTDTYTNIVTKSSLLSGEDFTSMHGNTKAALDYYVSINSDSYIATYFGNMDKMVAAMRAFKGLYKTLFLSRRGFAELTSQGLGGKELMQALWKVHRDDFAMGRGSALPECFCEFKL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3423 440 CDD O-FucT_plant 78 390 IPR024709 -
Ssu4g3423 440 PANTHER OS02G0726500 PROTEIN-RELATED 5 439 - -
Ssu4g3423 440 PIRSF UCP009360 3 439 IPR024709 -
Ssu4g3423 440 Pfam GDP-fucose protein O-fucosyltransferase 78 384 IPR019378 -
Ssu4g3423 440 PANTHER O-FUCOSYLTRANSFERASE 13 5 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3423 Ssu-Chr4 84850506 84853275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3423 72 417 Miscellaneous Gene Families AT1G22460 34.540 3.15e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3423 - - gmx:100801207 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3423 4 84850506 84853275 Ssu4g3423 4 84850506 84853275 ECH