Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3409 ATGGTGAAGGACAAATTAAAGAAACATGCTCTCACAGCTTTCACTCCTAATGGGGACTATGTGGCTATTCTGTCTGCCAATGGGATGGCCAAAATTTGGAACACAAACACTGGACATTTGTTAGCAGAGTGGAAGCCATCAGATGGAGATCGTGATATTCATTATTCTTGCATTGCATGTAGTTTCACTGGAAAAAAGcGTAGAAAAGAACGGGGAACTTGCTTATTAGCTCTCGGCGCAATTGATGGAAGTGTTCTGGGTGTTGATGTTTCCACTGGTGAGAGGAAGTTGACTACTAGCCATCCGGGGGGGATTTGTGGACTCTCATTTGCAAATAAAGGATGTCTTCTTCGCATTGTTGGACATAATGGGATGGCATATGAGGTTAATACTGAAACAGGAGAGCTtttaaaggaatttaaaatctcaaaaaagTCCGTCACTTCTCTGGCTTTCTCACATGATGAAAAATATTTAGCTATTGTCAGCTCTAAACTACGGGTTATAAGCTGGGAAATTGGGAAAGAGGTTCTGAAGTTCCCAAATGATTTGGGAACTGTACAGCACATTTCTATATCGAGTGATGCCAAAAATTTAGTTACATCAGATTTTGAGGGTAAACATCTTCAAGTTTGGAGGTGTGATTTAAATTCAGGAAATGTGGGTAGAGGTCCTACACTTCCCATAAGGCATCCTCCATTAGTTTTGGACTGCCACTGTGGTtgcaataaagaagaaaatttagtTGTTTTGGCAGTTATGGGTAGAGGTTCTGCTTATATATGGAATTTGAATGCCTCCTCCGAAGATCAGATACAGCCGACTAAATTGACCACGAAGACCAAAATAGTTGAAACAGATAAGGAAAATGGTGAAAGTTCAAAGAAAAGGCATACTTCGATTATTGCATCCAGATTACAACCTGTAGAGGAAGACAAACAGATGAAAGCTCTTGTGACCTATGGCTCTGTAGATCATCCACAGTTTAGTGTCTTAAATATTAGCAATTCAGGGGAGACTATAGTATTAAATGTAGGAGATGAGACCGGTTCTGTTCAGCGGCATGACAGTCCTTCTGGCAAAGTGGAAGCGGCAATACCAATGGAAagcaagaaaactaaaaaaagacaAGCAGCATCTGATCCTGATCTTCCAACCACAACTGACGAAGTGGATTTCGATCAACATGAGGCTGCAGAAGGAGTCCTTCTTGATGATGATTTGAATGAGCCAACAATGGGAGAGAAACTTGCTAGTCTAAGTTTGCTGGATGAGGACAAATCCAGGAGGGATAAAGAGCAAGTATCTTCTGTCTCAGCAAACCCTCCAAGTGCAGACTCTGTACATGTTTTGCTTAAGCAAGCATTAAATGCTGATGATCGTGCCCTTCTGCTAGATTGCTTGTATACGCAAGATGAGAAGGTTATTAGAAAGTCAATTGCAGAGTTGAACCCGTCTAACGTCCTCAAACTTCTGAACTCTCTCATATCCATTATTGAATCTAGggGTGCAATTTTGGCATGTGCTCTTCCATGGTTGAAGTGTCTACTTCTCCAGCATGCAAGCGGAATAATGTCCCAGGAATCTTCATTAAAAGTTTTGAACTCTTTGTATCAACTGATTGAGTCTAGAGTCTCCACTTTTAAATCTACCATCCAACTCTCAAATTGCTTAGACATCCTTTACACGGGGGTTATTGACGAGGAGGAAGATGAAGGTGAAATGGTGCCAGTTATCTATGAGGATAAGGATAGTGATGAAGAATCTGAGGATGCCATGGAAACTGACCAAGATAGCCAAGATGAAGAACAACAATCAGAAGAAGCATTTGGTGTCAGTGACATTGATGGAAGTAATGATATGATGGGAGATTGA 1875 0.3979 MVKDKLKKHALTAFTPNGDYVAILSANGMAKIWNTNTGHLLAEWKPSDGDRDIHYSCIACSFTGKKRRKERGTCLLALGAIDGSVLGVDVSTGERKLTTSHPGGICGLSFANKGCLLRIVGHNGMAYEVNTETGELLKEFKISKKSVTSLAFSHDEKYLAIVSSKLRVISWEIGKEVLKFPNDLGTVQHISISSDAKNLVTSDFEGKHLQVWRCDLNSGNVGRGPTLPIRHPPLVLDCHCGCNKEENLVVLAVMGRGSAYIWNLNASSEDQIQPTKLTTKTKIVETDKENGESSKKRHTSIIASRLQPVEEDKQMKALVTYGSVDHPQFSVLNISNSGETIVLNVGDETGSVQRHDSPSGKVEAAIPMESKKTKKRQAASDPDLPTTTDEVDFDQHEAAEGVLLDDDLNEPTMGEKLASLSLLDEDKSRRDKEQVSSVSANPPSADSVHVLLKQALNADDRALLLDCLYTQDEKVIRKSIAELNPSNVLKLLNSLISIIESRGAILACALPWLKCLLLQHASGIMSQESSLKVLNSLYQLIESRVSTFKSTIQLSNCLDILYTGVIDEEEDEGEMVPVIYEDKDSDEESEDAMETDQDSQDEEQQSEEAFGVSDIDGSNDMMGD 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3409 624 SUPERFAMILY WD40 repeat-like 13 268 IPR036322 GO:0005515
Ssu4g3409 624 MobiDBLite consensus disorder prediction 419 444 - -
Ssu4g3409 624 Gene3D - 10 290 IPR015943 GO:0005515
Ssu4g3409 624 SMART WD40_4 133 172 IPR001680 GO:0005515
Ssu4g3409 624 SMART WD40_4 173 213 IPR001680 GO:0005515
Ssu4g3409 624 SMART WD40_4 4 34 IPR001680 GO:0005515
Ssu4g3409 624 MobiDBLite consensus disorder prediction 348 392 - -
Ssu4g3409 624 Pfam Dip2/Utp12 Family 460 561 IPR007148 -
Ssu4g3409 624 MobiDBLite consensus disorder prediction 573 624 - -
Ssu4g3409 624 PANTHER OS01G0649000 PROTEIN 65 621 - -
Ssu4g3409 624 PANTHER WD REPEAT-CONTAINING 65 621 - -
Ssu4g3409 624 MobiDBLite consensus disorder prediction 573 609 - -
Ssu4g3409 624 MobiDBLite consensus disorder prediction 420 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3409 Ssu-Chr4 84707170 84714085 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3409 K14546 - gmx:100792757 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3409 4 84707170 84714085 Ssu4g3409 4 84707170 84714085 ECH