Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3405 ATGCGATTGTCCCCTTGTGCGAACGCCACTTCGATGGGATCCGGGTCGGGTTCTCTCCTGTGGTTCCGGAAGGGTGTTCGGATCCACGACAACCCCGCTCTCGAGTTCGCTTCCCGCGGTGCCTCTCATCTCTACCCTGTCTTCGTGATCGACCCGCATTACATGGAACCCGACCCGCACGCTTCCACACCCGGGTCCTCGCGCGCGGATCTCAACCGCATCAAGTTCTTGCTGGAGAGCCTCGTGGACCTTGACCTCAACCTCAAGACCCTTGGCTCGCGACTTTTGATTCTCAAGGGTGACCCTGCCGAAGTTGTCATTCGATGCTTGAAGGAGTGGAATGTCAGGAAGCTATGCTTTGAGTACGACACTGAACCGTATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCACTTGCTGCTGGGATTGAGGTTTTCTCTCCTGTAAGTCACACACTCTTCAATCCCTCGGATATTATAAAGAAGAATGGAGGGAAGCCGCCCCTTAGTTATCAATCGTTTGTCAAGCTTGCTGGGGAACCACCACCTCCTCTCTCAACTGTGTACTCTTCACTTCCTCCAGTTGGTCATCTTGGAAGTTGTGATGTTTCTGAAGTTCCAACAATCAAAGATCTTGGATATGGAGATGCTGAACAGGATGAGTTCTCTCCTTTCAAAGGTGGTGAGTCAGAAGCATTGAAGAGGTTGGATGAATGCATGAAAGACAAGaaGTGGGTGGCAAACTTTGAGAAACCCAAGGGCAATCCGTCTGCATTTCTTAGGCCTGCAACAACCGTGTTATCACCTTACCTGAAATTCGGTTGTCTCTCTTCCAGATATTTCTACCAGCGCATTCAAGATGTATATAAAAGTATGCCAAAGAATACATTACCTCCTGTTTCTCTGACAGGACAGTTGTTGTGGCGAGACTTCTTTTACACAGCAGCTTTTGGAACACCAAATTTTGATAGGATGAAGGGCAATAGGATATGCAAGCAGatTCCTTGGAAGGATGATGATAAACTGCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGATCCAGCTACGCAAATGGGGTTGGATGCACCATTTGGCACGGCATTCTGTTGCATGTTTTCTAACTCGTGGTGATCTGTTTGTTCATTGGGAAAAAGGACGAGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCAATTAATAATGGAAACTGGATGTGGCTTTCTTGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCCCCAACCACATTTGGTAAGAAGTATGACCCTAATGGCGACTATATTAGGCATTTTCTCCCCGTCTTAAAAGATATGCCCAGGGAGTACATTTATGAACCCTGGACGGCTCCTCGAAGCATTCAGACCAAAGCAAATTGCATAATTGGTAAAGACTACCCAATGCCAGTTGTTTCTCATGATTCTGCGAGTAAAGAGTGCCGAAGGAAAATGGGCGAGGCATATGCATTGAATAAAGAATTGAATGGTTTGGTCAGTGAAGATGATCTGGAAAACTTGAGGAGGAAATTAGATGAGAATGAAGGACAAGAGGCTGGAGCTAAAAGATATAGGCAAAGCTGA 1632 0.4608 MRLSPCANATSMGSGSGSLLWFRKGVRIHDNPALEFASRGASHLYPVFVIDPHYMEPDPHASTPGSSRADLNRIKFLLESLVDLDLNLKTLGSRLLILKGDPAEVVIRCLKEWNVRKLCFEYDTEPYYQALDVKVKNFALAAGIEVFSPVSHTLFNPSDIIKKNGGKPPLSYQSFVKLAGEPPPPLSTVYSSLPPVGHLGSCDVSEVPTIKDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKKWVANFEKPKGNPSAFLRPATTVLSPYLKFGCLSSRYFYQRIQDVYKSMPKNTLPPVSLTGQLLWRDFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWTAPRSIQTKANCIIGKDYPMPVVSHDSASKECRRKMGEAYALNKELNGLVSEDDLENLRRKLDENEGQEAGAKRYRQS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3405 543 CDD USP_Like 33 118 - -
Ssu4g3405 543 Gene3D HUPs 14 151 IPR014729 -
Ssu4g3405 543 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 18 199 IPR036155 -
Ssu4g3405 543 Gene3D - 152 319 - -
Ssu4g3405 543 Pfam FAD binding domain of DNA photolyase 305 501 IPR005101 -
Ssu4g3405 543 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 16 154 IPR006050 -
Ssu4g3405 543 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 18 512 - -
Ssu4g3405 543 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 217 507 IPR036134 -
Ssu4g3405 543 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 321 543 - -
Ssu4g3405 543 Pfam DNA photolyase 18 179 IPR006050 -
Ssu4g3405 543 PANTHER CRYPTOCHROME 18 512 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3405 Ssu-Chr4 84666650 84671019 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3405 K02295 - gmx:100780347 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3405 4 84666650 84671019 Ssu4g3405 4 84666650 84671019 ECH