Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3394 ATGATGGATTCCCAAACAGTTTTCCAGGTTCCCGTGGTGGACTTCACTCAGGAGGGGTTGAAACCCGGTACAGAAAGGTGGGCTTCAGCATGCCAAGTGATCCGGAGTGCACTTGAGGATCATGGTTGTTTTTACGCACTGTGTGACAAAGTTCCTATGGAGCTTTACAACTCAGTTTTTACTCTAATGGAAGAACTATTTGATCTTCCATTGGAAACAAAGATGCAAAAGATCAGTGATAAGCCCTACCATGGTTATTATGGACAAAATGTTCGTGTCCCTCTATATGAATCCCTAGGGATCAACGATCCATTGACCATGGAAGGAGTTCAAGAGTTCGCCAAACTAATGTGGCCAGCAGGATATGATCATTTCTGTGAGACTCTCGGTCTCTATGCAAAGCTGCTGGTGGAATTGGACCATATCACTAAAAGAATGGTGTTTGATGGCTATGGTCTGGACCAAAGGCACTGTGATTCCCTTCTCGAATCAACCAATTACATGCTTCGGAGCTTCAAATATAGACTGCCGCAGAAGGATGAAAATAATTTGGGATTGCATGGTCACACCGACACCTCCTTCTTTACCATTTTGCATCAGAATAATGTAAATGGTTTGcaagtaaaattgaaaaatggagAGTGGATTGATACTGATCCCTCACCCTTCATGTTTCTGATCCTCGCAGGCGATGCATTTAAGGTTTGGAGTAACGATAGGATGCACTGTTGTGAACACCGAGTCATTATAAGTGCAAAGAAGGAAAGGTACTCCATGGGACTATTTTCGCTTGGCGGCAAGATGGTTGAAACACAAGAAGAGCTAGTTGATGAAGAGCATCCAAGACGTTATAAGCCATTTGATCATTATGAATACCTACGTTTCTATGCAACAAAAAAGGCCTTAGAATCCGGGTGTCGGATCAAAGCATTCTGCGGCATAGACTAG 948 0.4251 MMDSQTVFQVPVVDFTQEGLKPGTERWASACQVIRSALEDHGCFYALCDKVPMELYNSVFTLMEELFDLPLETKMQKISDKPYHGYYGQNVRVPLYESLGINDPLTMEGVQEFAKLMWPAGYDHFCETLGLYAKLLVELDHITKRMVFDGYGLDQRHCDSLLESTNYMLRSFKYRLPQKDENNLGLHGHTDTSFFTILHQNNVNGLQVKLKNGEWIDTDPSPFMFLILAGDAFKVWSNDRMHCCEHRVIISAKKERYSMGLFSLGGKMVETQEELVDEEHPRRYKPFDHYEYLRFYATKKALESGCRIKAFCGID 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3394 315 Gene3D - 1 303 IPR027443 -
Ssu4g3394 315 Pfam 2OG-Fe(II) oxygenase superfamily 173 262 IPR044861 -
Ssu4g3394 315 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 164 266 IPR005123 -
Ssu4g3394 315 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 313 - -
Ssu4g3394 315 Pfam non-haem dioxygenase in morphine synthesis N-terminal 10 88 IPR026992 -
Ssu4g3394 315 PANTHER 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 5 313 - -
Ssu4g3394 315 SUPERFAMILY Clavaminate synthase-like 5 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3394 Ssu-Chr4 84526238 84527786 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3394 177 311 Glycosyltransferase AT5G59530 33.333 3.58e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3394 - - gmx:100794707 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3394 4 84526238 84527786 Ssu4g3394 4 84526238 84527786 ECH