Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3393 ATGGGTTCAGAAGCCACTCTAAAGCTTCCGGTCATCGACTTTACTAACCTCAAATTGGAAGCCAACAATCCTAATTGGGAGGCAGTAAAATCCCAAGTCCACAAGGCACTAGTAGAGTACGGTTGCTTTGAAGCAACTTTTGATGAAGTTCCTTTAGACATTCGCAAAGCCATATTTGCTGCACTACAAGAGCTCTTTGATCTCCCTCTACAAACAAAGATACTCAATGTGTCTAAGAAACCCTATCATGGCTATGTTGGGCAACATCCTATGGTCCCACTTTATGAAAGCATGGGCATTGATGATGCAAATGTCTATGAGAAAGTAGAAAGCATGGCCAACATCATGTGGCCTGATGGAAACCCAAGTTTTAGCAAAACCATACAATCCTTCTCTGAGCAGCTATCAGAGTTGGATCAGATTATTAGGAAGATGATTTTGGAGAGCTTGGGAGTTGAAAAGTACTTGGAGGAGCACATGAACTCAACCAATTATCTTCTCAGGGTTATGAATTACAAAGGCCCTCAAACCAGTGACACAAAGGTAGGCCTCAGCACACACACAGACAAGAACATAGTGACCATATTGTACCAAAATGAAGTGGAGGGTTTAGAGGTGTTGACCAAAGATGGAAAATGGATAAGCTACAAGCCTTCCCCTGACAGCTTTGTTGTCATGATTGGTGACTCTCTCCATGCATGGTCAAACGGCAGGCTGCATTCACCCTTTCACCGCGTGATGATGAGTGGGAATGAGGCAAGATACTCTGCAGGGCTGTTCTCTGTCCCCAAAGGAGGGAGCATTATAAAAGCCCCAGAGGAGCTGGTGGATGAGGAACACCCTCTGCTCTTTAAGCCTTTTGATCATGTTGAGTTCCTCAAGTATTATTACACTGAAAAAGGCCAGAGAGATCAATTTGCACTGCGCACTTACTGTGGTGTTTGA 945 0.4413 MGSEATLKLPVIDFTNLKLEANNPNWEAVKSQVHKALVEYGCFEATFDEVPLDIRKAIFAALQELFDLPLQTKILNVSKKPYHGYVGQHPMVPLYESMGIDDANVYEKVESMANIMWPDGNPSFSKTIQSFSEQLSELDQIIRKMILESLGVEKYLEEHMNSTNYLLRVMNYKGPQTSDTKVGLSTHTDKNIVTILYQNEVEGLEVLTKDGKWISYKPSPDSFVVMIGDSLHAWSNGRLHSPFHRVMMSGNEARYSAGLFSVPKGGSIIKAPEELVDEEHPLLFKPFDHVEFLKYYYTEKGQRDQFALRTYCGV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3393 314 Pfam 2OG-Fe(II) oxygenase superfamily 168 260 IPR044861 -
Ssu4g3393 314 Gene3D - 7 311 IPR027443 -
Ssu4g3393 314 Pfam non-haem dioxygenase in morphine synthesis N-terminal 9 87 IPR026992 -
Ssu4g3393 314 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 5 313 - -
Ssu4g3393 314 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 162 263 IPR005123 -
Ssu4g3393 314 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 5 313 - -
Ssu4g3393 314 SUPERFAMILY Clavaminate synthase-like 6 301 - -
Ssu4g3393 314 PRINTS Isopenicillin N synthase signature 223 249 - -
Ssu4g3393 314 PRINTS Isopenicillin N synthase signature 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3393 Ssu-Chr4 84502477 84503649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3393 3 297 Glycosyltransferase AT5G59530 23.871 2.51e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3393 - - gmx:100784444 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3393 4 84502477 84503649 Ssu4g3393 4 84502477 84503649 ECH