Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3370 ATGTTTCGGTGGCTATTGAAGCCCAGGTTCTATTCAAAATGCTTGTCGTACGTGAAGTTTATGAAGACGCGGCTAGAGACTATACAGAAGAGGAAGAAAGCAGTGCAGAAGTTTCTGAAGAGTGACATCGCCGAGCTTCTTAGGAGTGGCTTTGACTACGATGCATACAAAAGGGCTGCAGGGCTTCTGTTTGAGCAAAATATGTTATCCTGCTATGAACTCATTGAAAAGTTTGTTGGATGCATATCAGATCATGTTGAGGACCTAACTAAGCAGAAGGATTGCCCTGATGAATGCAAGGAAGCTGTGCCATCATTGATGTATGCTGCAGAAAGATTTGGTGATCTGCCGGAATTGCGTCACCTCAGAACATTATTTACCGAGAAATTTGGGAATTCTCTTGAaccttatataaataaagagTTTGTTGAGAAGCTGAGGCGAGATCCACCTACGAGAGAAATGAAGATTAGATTGTTATATGACATAGCACAAGAGTTCTCTATAGTGTGGGATGACGAGGCTTTGAGGCAAAGCCTTTACACACAGTCGTCATTATGTGATGAGAGGCCAAATCCTGGGGGAGAACACACAAATGGTAGAGACTGCAATACATccaaaggaaaggaaagagacACCCTACCTTTAGGAGGGAATGATTTCAATAATGACTCGTGGATTCACCAAAGCAGTAGTGATAATGAAACAAGTACATCCCAAGATAAGGGTAGTAGTTCAAGTTCATTGGGAAGCGTATCTGAGGATGAAGTGGAAACTAAGAGGCCAATTTCCTATCGGCTAATTCCACCCCCATACCTCAAACAAAAAACTAACAAAGGTGAAAGCAATTCAAAGAAAACAACGGATTCTGACGATGCAACAGTAGATTCAGGTGGAAACAAATCAGGCAAAGAATATGATACTGGGCAAAACAGAAAGCGTGCCACATCGCATGTAAGAGGAAAATCTCTTCCTTCTGAACCCGCAACTTCAGTGGAAACATCAAAAGGGCATACACGAGCAATTTCCTCAGAATCAGGAGTGCGGGGTGGTGCATGGCATGTGCATCCTAATCTACCCGATTATGATGAGTTGAGAGCTCGTCTTTTAGCTCTCAGACAGAGATAA 1128 0.4149 MFRWLLKPRFYSKCLSYVKFMKTRLETIQKRKKAVQKFLKSDIAELLRSGFDYDAYKRAAGLLFEQNMLSCYELIEKFVGCISDHVEDLTKQKDCPDECKEAVPSLMYAAERFGDLPELRHLRTLFTEKFGNSLEPYINKEFVEKLRRDPPTREMKIRLLYDIAQEFSIVWDDEALRQSLYTQSSLCDERPNPGGEHTNGRDCNTSKGKERDTLPLGGNDFNNDSWIHQSSSDNETSTSQDKGSSSSSLGSVSEDEVETKRPISYRLIPPPYLKQKTNKGESNSKKTTDSDDATVDSGGNKSGKEYDTGQNRKRATSHVRGKSLPSEPATSVETSKGHTRAISSESGVRGGAWHVHPNLPDYDELRARLLALRQR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3370 375 Pfam Regulator of Vps4 activity in the MVB pathway 18 169 IPR005061 GO:0015031
Ssu4g3370 375 PANTHER IST1 FAMILY MEMBER 9 374 IPR005061 GO:0015031
Ssu4g3370 375 MobiDBLite consensus disorder prediction 218 253 - -
Ssu4g3370 375 Gene3D - 4 179 IPR042277 -
Ssu4g3370 375 MobiDBLite consensus disorder prediction 323 342 - -
Ssu4g3370 375 MobiDBLite consensus disorder prediction 185 359 - -
Ssu4g3370 375 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 9 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3370 Ssu-Chr4 84121665 84123885 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3370 - - gmx:102665874 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3370 4 84121665 84123885 Ssu4g3370 4 84121665 84123885 ECH