Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3361 ATGGAAGATAAAGAAGGAACGCCAAAATTCCCAGGGTTCCCTTTCAAACCCTATTCGATTCAGATTGATTTCATGAACAGTTTGTATGAATCTCTCAGTCAAGGTGGCGTGTCTATGTTGGAGAGCCCAACTGGGACTGGGAAGACCATGAGTGTGATTTGCAGTGCTTTGCAGTGGGTGCTTGATCGGAGGTTGCAACAGGAAGCAACATGTGGTGAGGATACAGGGAATGCCGGCGGTGGCCTTGGTTCAGATGACGAACCTGATTGGATGAGAGACTTTGTCGTCAATAAAGAGGAGAAtaagaaggaagagaagagtgGGTCTGTGTTGGGAAAACctcataataataagaagagCAAGAAAATTTGTAAGGAAGTTAGGGTTTTGGGTGTTGGAGAGTCTAATGTGGAAAAGGGGTGTGAGAGTTtgcaaaagaaaattgatgTGGTGGATATTAGTGATAAGGAGTTTTTACTGGAGGAATATGAGAGTGAAGATGAGAAAGGCCTAGTTAGTGTGGTGTCCAAGAGGAAGGCTGTTAAAACCTCCTTTAGTTCCTCTAGTGAAGATGAGTCTggtgaggaggaggaggaggaagaggagaagAAGTTGAAGGTTTATTTCTGTAGTCGAACTCATTCACAGCTTTCACAGTTCATAAAGGAGTTGCGGAGGACAGTCTTTGCTAATGAGATGGATGTTGTGAGTTTAGGCTCCAGGAAAAATCTTTGCATTAATGAAGAAGTAGTTACACTTGGAAACTCCACACGCATAAATGAGCGATGCTTGGAActacagaagaaaaagaaaaatgaagctACAAAAGTTAAGAACTTAAAAGCAGGTGCAGGGCTACGCAGAACAAAGGTCTCCTCTGGCTGTCCAATGCTTAGAAAACATAGAGTACAACAAGAATTTAGGAATGAGGTATCTCAAAAAGGGCCCTTGGATATTGAAGATCTTGCTAATCTTGGAAGAACTATGGGAACTTGTCCATACTATGGCTCTAGAAGCATGGTTCAGAGAGCTGATCTTGTGGTCCTACCATATCAATCTCTTCTATCTAAATCATCTCGTGAAGCACTTGGTCTGAATTTGAAAtccaatattattataatagatgAGGCTCATAATTTAGCTGATTCACTCATCAATATGTATGACTCCAAAATTACTTTATCACAGCTGGAGACTGTGCATTGCCATGTGGAACGGTATTTTGTGAGATTCCGGAATCTTCTGGGACCTGCTAATCGGAGATATATTCAAACTCTGATGGTCCTCACAAAAGCTTTTCTCCGAGTACTACTcgatgaaaaaaatagagatctTACAGATTCTTGCCGTGATATAGATGAAGCTTCTGAAGAAAGTAGAGCCTCTGATTTTACTATGGCCatcaatgattttttatttgaattaaatatagacAATATCAACTTGGTCAAATTGTTGAAGTATATAAAGGAAAGTAATATCATGCACAAGGTTAGTAGTTATGGAGAAAAGCTGGCTACCTTGGAGAAAATACCAGCAGTCCATAAAATTGAGGAACATGCTGAGGAGGGAAGCTGTGTGTCTGCTTTCCAGGCCTTAGCCGACATATTGCTATCACTGACAAACAATGATGGTGATGGACGGATAATAATTTCCAGGTCTAAGTCAACGAGCCTCAGGAAGCAAGGAGGATATATGAAGTATGTTATGCTCAGTGGAGAGAAGATTTTCTCTGAGATTGTAGATGAATTACATGCCGTTGTATTAGTAGGAGGAACACTTCAACCTATAGAAGAGACAAGGGAGCGTCTCTTTCCGTGGTTGCCCCCAAATCAGTTGCATTTCTTTTCATGTGGTCATATTGTCCCTCCAGATAGCATTATGCCAATTGTGGTTATGCGTGGGCCTACTGGCCGTTCCTTTGATTTTAGCTTAAGCTCTAGGAGCTCACCAGATATGATGCGAGAACTAGGTCTTTTGCTATGTAATTTGGTGACTGTGGTTCCTGAAGGAATTGTagtcttcttcccttcttttgatTATGAAAGTAGAGTCTATGAAAATTGGGAGGCATCTGGCATCCTTGAAAGGATTACAAAGAGGAAGCGTGTCTTTAGGGAGCCTAGGAATAACATGGATGTTGAATCTGTTCTCAAGGAATACAAAGATACCATTGATACATTATTGGGTATGAATTCAGAAATAAACCAAGCATCTCATAGTGGTGCAATACTCCTTGCtgttgttggtgcaaagttaTCTGAAGGGATCAACTTAAGTGATGGGATGGGCCGATGCATAGTCATGGTTGGACTGCCATATGCTAGCCCATCTGACATTGAATTGTTGGAGAGGATAAAGCACATTGAAGGTTTTCGAAATTTAAAGCTCCTTGAGAATCCTAGCTTTTCTTCCAGTTATGATCTATACAATGGAGATGTACAAGGTGGTTTTGACATCTTAAGAAGTTGCAGTCACAGAGGAAAAGAGTACTATGAGAATCTCTGCATGAAAGCTGTAAATCAATCAATAGGTAGAGCAATCCGTCACATTAATGACTATGCAGCAATTCTGTTGGTCGACACAAGGTATGCATCTGATTTCTCAAAACGGAGCTTTGCCCACCCAGTCACCAAGCTCCCCCAGTGGATAAAAGATCGTCTTGTTTCTTCCATTAACTATGGGGAGGCACATAGGTTGTTGCATCAGTttttcaaacacaaaaacacGAGCTGCCCTTAG 2742 0.3815 MEDKEGTPKFPGFPFKPYSIQIDFMNSLYESLSQGGVSMLESPTGTGKTMSVICSALQWVLDRRLQQEATCGEDTGNAGGGLGSDDEPDWMRDFVVNKEENKKEEKSGSVLGKPHNNKKSKKICKEVRVLGVGESNVEKGCESLQKKIDVVDISDKEFLLEEYESEDEKGLVSVVSKRKAVKTSFSSSSEDESGEEEEEEEEKKLKVYFCSRTHSQLSQFIKELRRTVFANEMDVVSLGSRKNLCINEEVVTLGNSTRINERCLELQKKKKNEATKVKNLKAGAGLRRTKVSSGCPMLRKHRVQQEFRNEVSQKGPLDIEDLANLGRTMGTCPYYGSRSMVQRADLVVLPYQSLLSKSSREALGLNLKSNIIIIDEAHNLADSLINMYDSKITLSQLETVHCHVERYFVRFRNLLGPANRRYIQTLMVLTKAFLRVLLDEKNRDLTDSCRDIDEASEESRASDFTMAINDFLFELNIDNINLVKLLKYIKESNIMHKVSSYGEKLATLEKIPAVHKIEEHAEEGSCVSAFQALADILLSLTNNDGDGRIIISRSKSTSLRKQGGYMKYVMLSGEKIFSEIVDELHAVVLVGGTLQPIEETRERLFPWLPPNQLHFFSCGHIVPPDSIMPIVVMRGPTGRSFDFSLSSRSSPDMMRELGLLLCNLVTVVPEGIVVFFPSFDYESRVYENWEASGILERITKRKRVFREPRNNMDVESVLKEYKDTIDTLLGMNSEINQASHSGAILLAVVGAKLSEGINLSDGMGRCIVMVGLPYASPSDIELLERIKHIEGFRNLKLLENPSFSSSYDLYNGDVQGGFDILRSCSHRGKEYYENLCMKAVNQSIGRAIRHINDYAAILLVDTRYASDFSKRSFAHPVTKLPQWIKDRLVSSINYGEAHRLLHQFFKHKNTSCP 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3361 913 Gene3D - 14 74 IPR027417 -
Ssu4g3361 913 SMART ultradead3 13 455 IPR014001 -
Ssu4g3361 913 TIGRFAM rad3: DNA repair helicase (rad3) 157 898 IPR013020 GO:0003678
Ssu4g3361 913 Gene3D - 171 444 IPR027417 -
Ssu4g3361 913 Coils Coil 438 458 - -
Ssu4g3361 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 392 IPR027417 -
Ssu4g3361 913 Pfam Helicase C-terminal domain 661 874 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Ssu4g3361 913 Pfam DEAD_2 209 397 IPR010614 GO:0003677|GO:0003678|GO:0005524
Ssu4g3361 913 CDD SF2_C_XPD 625 864 - -
Ssu4g3361 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 7 439 IPR014013 GO:0005524
Ssu4g3361 913 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 9 896 IPR045028 -
Ssu4g3361 913 SMART deadxpd 9 420 IPR006554 GO:0003678|GO:0016818
Ssu4g3361 913 SMART Cxpdneu3 679 866 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Ssu4g3361 913 Gene3D - 639 878 IPR027417 -
Ssu4g3361 913 PANTHER ATP-DEPENDENT DNA HELICASE DDX11-RELATED 9 896 IPR028331 -
Ssu4g3361 913 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3361 Ssu-Chr4 84035472 84040157 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3361 K11273 - gmx:106794132 1523.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3361 4 84035472 84040157 Ssu4g3361 4 84035472 84040157 ECH