Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3359 ATGGaactaaaaattgttttggCTGCTGAGAACAAACTGCATCCTGCTTTATTTTCTGCTGAAGCTGAGCATAAGGTTTTGCAGCATCTGATGACCGGTCTTATGCATGTTACTTTCAAGTCTGAGGATTTGCAGTGTTCTTTCTTTCGATATGCTGTCAGGGAGCTTCTTGCATGTGCTGTAATACGACCTGTTCTAAACTTAGCAAATCCAAGATTTATTAATGAAAGAATTGAATCTGTGGTAGTTAACAAGACCAAGGTTAACAAGGTGGTTGCTGCAGCTCAAGAGGCATCTCACACTAAAGCAGATGAGTTACAGACTTCATCTGACCATTTCTCCAAGAGTTCAGATCCTTCTGTTACTGGTGTTGAGCTTGTGCAGCTAAGAAATGGTCAATCCAGAAATGCAGAGTCATCTGCAGAAAATAAAGCCCGTGATAATATTTCTAAAGATCCGTTGCTTTCAATTGATGCTCCATCTTCCCGTACGTGGAACTCATTGCCTGCAAACTCCCAAACTAATGATGACCAAGGTATTCAACGACATCGCTCAGGTGGAGAGTGGGGAGATATTTTAGATGTTATCTCTCGCAGAAAGACCCAAGCTCTTGCTCCCGAACATTTTGAGAATGTGTGGACTAAGGggaaaaattacaagaaaaaggaTGGCGAGAACCAGTCAAATGAACATGTTTCGCAGCATCCTGTGGTAGGAAAACTGCCGAAGGTAGATCATATGAAGGCGTTATCTGGACCCAAAGAAAGAGATACTAATTCCAAGCTTATTCCCTCTAAGGGAGGCCGCATTAATTCTGGACACAGCAGTCAATTCTCTGTTGAAAATACATCTGTTCATGCAGACAAGAATGGATCAACTTCAGCTACCTCATATAAAGATGATGAGCACAGCCACATTTATGGGCAGATGAGTGATTCAGAGAGCAGTACTTATACTTCTGAAGATGATGAAAGTAGTACTGTCACTGGTCTTGATTCCCCTGTCACTAAGGTTTGGGATGGAAGAAGTAATAGAAACCAGGCTGTTTCTTATGTTCATCACccacttgaaaattttgaaaatcacagtacaaagaaaaggaataagagCCATTCTCGCTATCCAAGATTATCCAGAGCCCAATCTGGCAGTAAAAGGTCTTGGCCAGGTGGTCATAAAATACAAACGTGGCAGGAAGTTGAGAGAACAAGCTTTTTATCTGGAGATGGTCAAGACATACTAAATTCTTCAAAATCACATATAAATTCTGAGGAGTCCAGTGATGATGCTGATATGGAAAGTTTGGGTAGACTTTATAGTGGAGCAGCTGCCTCCTCTTCTGCATATAACTCAGAATCTTGTAGTTTGTCTGTTAATCCCCTGAAAAGTTCCTCTGCCGTAGATTCCTTTTACAAGTTGAGATGTGAGGTCTTAGGTGCAAATATTGTGAAGAGCGGCTCAAAAACCTTTGCTGTTTACTCCATATCCGTTACAGATGTAAATAATAACAGTTGGTCAATTAAAAGAAGGTTTCGTCATTTTGAGGAGCTACATCGACGCCTGAAAGAGTTCCCTGAGTATAATCTTCATTTGCCACCAAAACATTTTCTGTCAACTGGTTTAGATGTATCAGTCATTCAAGAGCGGTGTGAATTACTGGATAAATATTTGAAGATACTTATGCAACTGCCAACAGTGTCAGAATCAATTGAAGTATGGGACTTTCTCAGTGTGGATTCTCAGACATACATATTctcaaattctttttctatcatGGAAACATTATCAGTTGGCCTTGATGCCAAGCCATTAGAGAAGACTAAAAACACTTCCAACTTCTCTGCACCTGCAAGTGGCCCTGTTGCCTTTCGGAAGGAAAACTGTAGTGCTGAAAGTAAAGAGGCTGTTTTGCGAGCAAGAAATAATGTTGAGGCTGATGGATTGAAGTCAAAAGTAAACAGCATGCCTCTTTCTCTACCACAAAAGAATACACATGAACCTAGAAAGTCATTTGACAATTCTGGCAGCAATACAGATATTCTAGCACGGAAGAGTGCACCTTCTCCCAATAACTTGCAGAAGACAGTGAAAGGAAGAGATAATTCAGATGAGGTTTCTGAAGTGCCCCATGATACTGCTGATGCTTTTCCAACAGAGTGGGTGCCGCCAAATTTGAGTGTACCCATATTGGATCTGGTTGATGTTATCTTCCAGGTTCAAGATGGTGGATGGATTAGGCGGAAGGCTTTTTGGGTTGCTAAACAAGTCTTACAACTAGGAATGGGTGATGCCTTTGATGACTGGTTGATAGAGAAAATTCAGCTTCTCCGTAAGGGATCAGTGATTGCTTCAGGGGTCAAGCGAGTTGAGCAAATACTCTGGCCTGATGGAATATTCATAACTAAGCATCAAATCGACGACGACGACCACCTAGTAGTCCATCTCAGAATTCACCTCATGGCCATCAACCTGCACAAGTATCTTCTCCAAGGTTGGATGATGAGCAGCAACAGGAGGCAGATCGGCGTGCAAAGTTTGTATATGAGCTAA 2550 0.4024 MELKIVLAAENKLHPALFSAEAEHKVLQHLMTGLMHVTFKSEDLQCSFFRYAVRELLACAVIRPVLNLANPRFINERIESVVVNKTKVNKVVAAAQEASHTKADELQTSSDHFSKSSDPSVTGVELVQLRNGQSRNAESSAENKARDNISKDPLLSIDAPSSRTWNSLPANSQTNDDQGIQRHRSGGEWGDILDVISRRKTQALAPEHFENVWTKGKNYKKKDGENQSNEHVSQHPVVGKLPKVDHMKALSGPKERDTNSKLIPSKGGRINSGHSSQFSVENTSVHADKNGSTSATSYKDDEHSHIYGQMSDSESSTYTSEDDESSTVTGLDSPVTKVWDGRSNRNQAVSYVHHPLENFENHSTKKRNKSHSRYPRLSRAQSGSKRSWPGGHKIQTWQEVERTSFLSGDGQDILNSSKSHINSEESSDDADMESLGRLYSGAAASSSAYNSESCSLSVNPLKSSSAVDSFYKLRCEVLGANIVKSGSKTFAVYSISVTDVNNNSWSIKRRFRHFEELHRRLKEFPEYNLHLPPKHFLSTGLDVSVIQERCELLDKYLKILMQLPTVSESIEVWDFLSVDSQTYIFSNSFSIMETLSVGLDAKPLEKTKNTSNFSAPASGPVAFRKENCSAESKEAVLRARNNVEADGLKSKVNSMPLSLPQKNTHEPRKSFDNSGSNTDILARKSAPSPNNLQKTVKGRDNSDEVSEVPHDTADAFPTEWVPPNLSVPILDLVDVIFQVQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLIEKIQLLRKGSVIASGVKRVEQILWPDGIFITKHQIDDDDHLVVHLRIHLMAINLHKYLLQGWMMSSNRRQIGVQSLYMS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3359 849 MobiDBLite consensus disorder prediction 155 180 - -
Ssu4g3359 849 ProSiteProfiles PXA domain profile. 1 82 IPR003114 -
Ssu4g3359 849 MobiDBLite consensus disorder prediction 247 262 - -
Ssu4g3359 849 ProSiteProfiles PX domain profile. 471 583 IPR001683 GO:0035091
Ssu4g3359 849 MobiDBLite consensus disorder prediction 264 294 - -
Ssu4g3359 849 Pfam Sorting nexin C terminal 744 803 IPR013937 -
Ssu4g3359 849 SMART PX_2 475 579 IPR001683 GO:0035091
Ssu4g3359 849 MobiDBLite consensus disorder prediction 654 696 - -
Ssu4g3359 849 PANTHER PHOX (PX) DOMAIN-CONTAINING PROTEIN 1 803 - -
Ssu4g3359 849 MobiDBLite consensus disorder prediction 216 393 - -
Ssu4g3359 849 SUPERFAMILY PX domain 472 580 IPR036871 GO:0035091
Ssu4g3359 849 MobiDBLite consensus disorder prediction 375 393 - -
Ssu4g3359 849 MobiDBLite consensus disorder prediction 112 139 - -
Ssu4g3359 849 MobiDBLite consensus disorder prediction 97 186 - -
Ssu4g3359 849 MobiDBLite consensus disorder prediction 649 709 - -
Ssu4g3359 849 CDD PX_SNX19_like_plant 473 577 - -
Ssu4g3359 849 PANTHER PX SERINE/THREONINE KINASE PXK 1 803 - -
Ssu4g3359 849 MobiDBLite consensus disorder prediction 309 351 - -
Ssu4g3359 849 Gene3D - 471 587 IPR036871 GO:0035091
Ssu4g3359 849 MobiDBLite consensus disorder prediction 408 432 - -
Ssu4g3359 849 Pfam PX domain 502 579 IPR001683 GO:0035091
Ssu4g3359 849 Pfam PXA domain 10 80 IPR003114 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3359 Ssu-Chr4 84027101 84031205 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3359 K17925 - gmx:100790491 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3359 4 84027101 84031205 Ssu4g3359 4 84027101 84031205 ECH