Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3356 ATGGCATCTCGCCGCCGCATGTTATTGAAAGTCATAATTCTCGGAGATAGCGGGGTTGGTAAAACATCACTGATGAATCAGTATGTGAATCGTAAATTTAGCAATCAGTATAAGGCAACCATCGGTGCAGATTTTCTTACCAAGGAAGTTCAATTTGAAGATAGGTTGTTCACATTACAGATTTGGGACACTGCTGGTCAAGAGCGGTTTCAGAGTCTTGGTGTGGCTTTCTACCGGGGTGCAGACTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCCTTTGATAACCTTAACCACTGGCGAGAAGAATTTCTTATTcaggcTAGTCCATCTGATCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAgatgttgatggtggaaatagCAGAGTTATTTCCGAGAAGAAAGCAAAGGCATGGTGTGCTTCAAAGGGAAACATACCATACTTTGAGACCTCTGCAAAAGAAGGATTTAATGTTGAAGCTGCTTTCCAGTGCATAGCAAAAAATGCACTCAAGAATGAACCTGAAGAAGAAATGTACCTGCCTGACACAATTGATGTTGGTGGTGGGGGACGACAGCAGAGATCTACTGGCTGTGAATGTTGA 624 0.4006 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3356 207 SMART ras_sub_4 6 179 - -
Ssu4g3356 207 PANTHER RAB FAMILY 1 205 - -
Ssu4g3356 207 PANTHER OS05G0516600 PROTEIN 1 205 - -
Ssu4g3356 207 CDD Rab7 9 182 - -
Ssu4g3356 207 Gene3D - 1 190 IPR027417 -
Ssu4g3356 207 SMART rab_sub_5 9 179 - -
Ssu4g3356 207 ProSiteProfiles small GTPase Rab1 family profile. 4 207 - -
Ssu4g3356 207 PRINTS Transforming protein P21 ras signature 9 30 - -
Ssu4g3356 207 PRINTS Transforming protein P21 ras signature 32 48 - -
Ssu4g3356 207 PRINTS Transforming protein P21 ras signature 50 72 - -
Ssu4g3356 207 PRINTS Transforming protein P21 ras signature 116 129 - -
Ssu4g3356 207 PRINTS Transforming protein P21 ras signature 154 176 - -
Ssu4g3356 207 ProSiteProfiles small GTPase Ras family profile. 3 207 IPR001806 GO:0003924|GO:0005525
Ssu4g3356 207 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Ssu4g3356 207 TIGRFAM small_GTP: small GTP-binding protein domain 10 172 IPR005225 GO:0005525
Ssu4g3356 207 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Ssu4g3356 207 SMART ran_sub_2 14 201 - -
Ssu4g3356 207 ProSiteProfiles small GTPase Rho family profile. 2 176 - -
Ssu4g3356 207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 186 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3356 Ssu-Chr4 83988053 83990484 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3356 K07897 - gmx:100783389 425.246