Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3351 atgggtAAAGCACTGGAACAAGAGCAGGAAAGTTACAGGTCCAAACTACTCCATTTCAAAGGAATGTTTAATACAGGGAAGCATACAAAGAGTTTGAGTATTGAGAGTGCCAGCGCATTAGATCCTTCTCCTTCAGAAGAAGATCCAGTGTCATCAAGAAGTCAAGGATCAAAACCTCTAAATGATCTAGATAAGGTTCCTAAGCCAAGGATAAGCAAAGAGGAAATTGCAGCCAAAGAAGCCAAAGACAAGCTATTGCAAGAAATGGAACAGATGAAGGAGAGATTTGCTAAACTGCTACTGGGGGAGGACATGTCTGGTGGAGGAAAGGGTGTTTCTTCAGCTTTGGCATTGTCAAATGCATTCACAAACCTTGCAGCTGCTGTTTTTGGTGAACAAAAGCGCCTAGAGCCAATGCCTCCAGAACGGAAAGCAAGatggagaaaagaaattgattgGCTTCTATCGGTCACCGATTCCATTGTTGAAATGGTTCCTGTGCAACAAAAAAACAAGGATGGCTCAACCATGGAGGTTATGACAACACGACAGAGAACTGATCTCCACATGAATATCCCTGCCTTACGAAAGCTTGATACAATGCTTATTGATTGTCTAGATAACTTCAAAGACCAAAATGAGTTCTATTATGTATCAAGAGATGCAGATGATTCAGATAgtacaaatagaaaaaatgatgaCAAGTGGTGGTTACCTACACCTAAGGTTCCTGCAGAAGGTTTATCTGACGCAGCAAGAAGGTTTGTTCAGTATCAGAAAGATTGTGTGACCCAAGTACTTAAAGCAGCTATGGCCATAAATGCTCAAACTCTATCAGAAATGGAGATCCCTGAAAACTATATTGAATCTCTACCCAAGaatggaAGATCAAGTCTAGGGGACTTGATCTACAGGAGCATTACAGATGAATTTTTCGATCCTGATCAGCTCCTAGCAGCTATGGACATGACATCAGAACATAAAATCGTAGATCTCAAGGACAGAATTGAGGCATCCATTGTGATTTGGAGGCGGAAGATGAACCATAAAGATTGCAAATCAACTTGGGGTTCTGCTGTGAGTATGGAGAAAAGAGAACTCTTTGAAGAGAGGGCAGAAACCATCTTACTTCTCCTAAAGCATCGTTTTCCTGGGATTCCCCAATCTGCATTGGATATAAGCAAAATCCAATTCAACCTGGATGTGGGGCAAGCTGTTCTTGAAAGCTATTCAAGAATATTGGAAAGCTTGGCCTTTACGGTGCTGTCAAGAATAGAAGATGTACTCCATGCAGATTACCTCACTCAAAATCCAACACAAGGAATAAAGAGCATTTCGAGAAACCAAATTACCAAGCCAGAGAAGTCTCCAACTCATAAAGAAGAGGTAGACAAGGGTGGCTCAGAAACCATGACACTATTAGATTTCATGGGTTGGGATCATGGTTACTCAGAAACTAAGAAAGACTTTGGAGTTTCAGATGACTTCTACAAAGACATTGATAATGGAAAACCCCAAAAACTTCCAGACATAGAGACCGACAAGAAGGTGTCCTACCTTGAGACATTGGGAGGTATGAGAAGTCCAACATCACGCCATTAA 1602 0.402 MGKALEQEQESYRSKLLHFKGMFNTGKHTKSLSIESASALDPSPSEEDPVSSRSQGSKPLNDLDKVPKPRISKEEIAAKEAKDKLLQEMEQMKERFAKLLLGEDMSGGGKGVSSALALSNAFTNLAAAVFGEQKRLEPMPPERKARWRKEIDWLLSVTDSIVEMVPVQQKNKDGSTMEVMTTRQRTDLHMNIPALRKLDTMLIDCLDNFKDQNEFYYVSRDADDSDSTNRKNDDKWWLPTPKVPAEGLSDAARRFVQYQKDCVTQVLKAAMAINAQTLSEMEIPENYIESLPKNGRSSLGDLIYRSITDEFFDPDQLLAAMDMTSEHKIVDLKDRIEASIVIWRRKMNHKDCKSTWGSAVSMEKRELFEERAETILLLLKHRFPGIPQSALDISKIQFNLDVGQAVLESYSRILESLAFTVLSRIEDVLHADYLTQNPTQGIKSISRNQITKPEKSPTHKEEVDKGGSETMTLLDFMGWDHGYSETKKDFGVSDDFYKDIDNGKPQKLPDIETDKKVSYLETLGGMRSPTSRH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3351 533 Coils Coil 71 102 - -
Ssu4g3351 533 PANTHER RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 87 533 - -
Ssu4g3351 533 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 87 436 IPR005512 GO:0005085
Ssu4g3351 533 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 87 533 IPR038937 GO:0005085
Ssu4g3351 533 MobiDBLite consensus disorder prediction 34 73 - -
Ssu4g3351 533 ProSiteProfiles PRONE domain profile. 79 442 IPR005512 GO:0005085
Ssu4g3351 533 Gene3D PRONE domain, subdomain 1 93 433 - -
Ssu4g3351 533 Gene3D PRONE domain, subdomain 2 282 398 - -
Ssu4g3351 533 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3351 Ssu-Chr4 83945922 83948483 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3351 - - gmx:100777496 883.248