Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3343 aTGGAGAAGATGAGGATAGAAGAGGTTCAGTCAACCACGAAGAAACAGCGTGTCGCTACCCACACTCACATTAAAGGTCTTGGTCTCGAGGCGAGTGGAAAAGCATCGCCTTTTGCTGCTGGGTTTGTGGGACAATTTGAGGCAAGAGAAGCATCCGGTCTTGTGGTTGACATGATACGGCAGAAGAAGATGGCCGGCCGAGCACTTCTTCTCGCCGGACCACCCGGAACCGGCAAGACGGCATTAGCCCTTGGGATAAGCCAGGAGCTTGGCACCAAGGTTCCATTCTGCCCAATGGTTGGCTCCGAAGTTTACTCCTCAGAAGTAAAGAAGACGGAGGTTCTCATGGAAAATTTTCGACGGGCCATTGGTCTGCGTATCAAGGAAAACAAGGAAGTATATGAAGGAGAGGTCACTGAGCTCTCTCCAGAAGAAATTGAGAGTGTAACAGGTGGTTATGGTAAAAGTATTAGCCATGTGATAATTGGATTGAAGACGGTGAAAGGAACCAAGCAACTGAAGTTGGATCCCACCATATATGATGCCTTGATTAAGGAAAAGGTAGCTGTTGGGGATGTTATATACATTGAAGCAAATAGCGGGGCTGTAAAAAGGGTGGGCCGAAGTGACGCTTTCGCTACAGAGTTTGACCTTGAAGCAGAGGAGTATGTTCCACTTCCTAAGGGAGAGGTTCACAAAAAAAAGGAGATTGTTCAGGATGTAACCCTACATGATTTGGATGCTGCCAATGCACGACCTCAAGGGGGGCAAGATATTTTGTCTCTTATGGGTCAGATGATGAAACCCAGGAAAACAGAAATCACTGACAAGTTGAGACAAGAAATTAATAAGGTTGTCAACCGATATATCGATGAAGGTGTGGCAGAGCTTGTCCCTGGAGTTCTATTCATTGATGAGGTTCATATGCTAGATATGGAGagtttttcatatttgaatCGTGCTTTAGAGAGCTCCCTATCTCCAATAGTAATCTTTGCTACTAATAGAGGAATATGCAATGTAAGAGGAACGGATATGACCAGTCCCCATGGCATACCTGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACGCAAACATATGGTCCTGCTGAAATGATACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTGGTTGTGGATGAGGAAAGCTTAGCTTTCCTTGGGGAAATTGGACAACGGACATCTTTAAGGCATGCAGTTCAGCTGTTATCACCTGCTAGCATTGTTGCAAAAATGAATGGCCGAGACAACATCTGCAAGGCGGATCTTGAGGAAGTTTGTTCGCTATATTTGGATGCCAAATCATCAGCCAAGTTACTTCAAGAGCAGCAGGagaaatatatttcataa 1377 0.4473 MEKMRIEEVQSTTKKQRVATHTHIKGLGLEASGKASPFAAGFVGQFEAREASGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGISQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEEIESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAELVPGVLFIDEVHMLDMESFSYLNRALESSLSPIVIFATNRGICNVRGTDMTSPHGIPVDLLDRLVIIRTQTYGPAEMIQILAIRAQVEELVVDEESLAFLGEIGQRTSLRHAVQLLSPASIVAKMNGRDNICKADLEEVCSLYLDAKSSAKLLQEQQEKYIS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3343 458 Pfam TIP49 AAA-lid domain 376 441 IPR041048 -
Ssu4g3343 458 Gene3D - 368 458 - -
Ssu4g3343 458 PANTHER RUVB-LIKE HELICASE 3 458 - -
Ssu4g3343 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 439 IPR027417 -
Ssu4g3343 458 Pfam TIP49 P-loop domain 17 368 IPR010339 GO:0005524
Ssu4g3343 458 CDD AAA 66 133 - -
Ssu4g3343 458 PANTHER RUVB-RELATED REPTIN AND PONTIN 3 458 IPR027238 GO:0008094
Ssu4g3343 458 Gene3D - 13 365 IPR027417 -
Ssu4g3343 458 SMART AAA_5 65 367 IPR003593 -
Ssu4g3343 458 Gene3D - 122 247 IPR042487 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3343 Ssu-Chr4 83864378 83868150 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3343 K04499 - gmx:102659805 871.692