Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3340 ATGGCTGAAGATTGGAACCGCACGGCCCTTCTTGTGATCGACATGCAGAAAGATTTTATAGAAGATTGGAGTTCTGTGGCACTAAAAGGAGCGAAAGACATTGTCCCAAACGTTATTAGGGCCGTGGAAGTTGCCAGGCAACGTGGGATTCTCGTAGTTTGGGTAGTACGTGAAAATGAGCCCTTAGGAAGAGATGTTGAGCTCTTTCGTCGGCATCATTATAGAGCGGAGAAAGTTGGTCCAGCCACTAAAGGAAGTGAAGGTGCAGAATTAGTTGATGGTTTGGTAATTAAAGAAGGGGATTATAAACTTGTGAAGACCAGGTTTAGTGCATTCTTTGCTACACACCTTCATTTGGTTCTTCAAGGAGCAGGAATTAATAGTCTAGTGGTCACTGGTGTTCAAACTCCAAACTGTATCAGGCAAACTGTCTTTGATGCTGTATCATTGGACTATCAACCTGTAACTGTTATTATTGATGCTACAGCAGCAGCCACACCTGATGTTCATCAAgGTGGCATACGGAGACTTCATGGTGAAGTCGAAGGTGTGATCGTCAAAGCCATGGGCATGTTTGCCTTGTACTTCAAAGTTCGTGTGTTGGATTCCATGCAGAATGCCATAATGTTCAACCAGCATTATCCTAAAGTCAGTCTAATTGGAGGAGTCGGTTAA 675 0.4356 MAEDWNRTALLVIDMQKDFIEDWSSVALKGAKDIVPNVIRAVEVARQRGILVVWVVRENEPLGRDVELFRRHHYRAEKVGPATKGSEGAELVDGLVIKEGDYKLVKTRFSAFFATHLHLVLQGAGINSLVVTGVQTPNCIRQTVFDAVSLDYQPVTVIIDATAAATPDVHQGGIRRLHGEVEGVIVKAMGMFALYFKVRVLDSMQNAIMFNQHYPKVSLIGGVG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3340 224 Pfam Isochorismatase family 8 180 IPR000868 -
Ssu4g3340 224 Gene3D - 2 192 IPR036380 -
Ssu4g3340 224 SUPERFAMILY Isochorismatase-like hydrolases 4 180 IPR036380 -
Ssu4g3340 224 CDD cysteine_hydrolases 9 178 - -
Ssu4g3340 224 PANTHER OS02G0276400 PROTEIN 1 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3340 Ssu-Chr4 83802304 83807863 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3340 - - gmx:100499982 318.546