Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3337 ATGACTCTCCCTCCACACGATGCTTGGATTCACACTTCCCACAACCTTCTCCCGCGATGGAAATCTCTTTCCCTTTCTCATCAGTCAACGATTCCAATTTCGATATCAAGAGTTAACCAAGTTGATGCAGCAAGATTGGACGTTGAAATGTCAGCCATGTTGAAGGAACAGTTGGTTAAAGTGTTCTCATTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCGGAGCTTGATGCTTTCCTCGAGTTTCTTATTTGGCGGTTCTCAATTTGGGCGGATAAGCCAACACCAGGCATTGCACTCATGAACCTGAGGTACAGAGACGAGCGTGCGGTAGAATCAAGAGATAAAGTCAGAACTGGTCTGGAGGGACCTGGACTCACAGTTGCTCAGAAGATTTGGTATTGTGTTGCCACTGTTGGTGGTCAGTATATATGGGCTCGCTTACAATCTTTCTCTGCTTTTCGTAGATGGGGTGATACTGAGCAGAGGCCATTGGCACGGCGTTTATGGATCTTGATACAACGGATGGAAGGAATTTATAGAGCTGCTTCATTTGGAAACTTGTTGATATTTCTTTGCACAGGAAGATATCGAAATCTCGTTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGGAGCCCAAATATGAATCGTGCTGTTAGCTTTGAATATATGAACCGGCAATTAGTTTGGAATGAATTCTCGGAAATGTTATTgttgcttcttcctcttcttaatTCATCGTCTGTGAAAAATCTCCTACGACCTTTTTCTAAAGATAAATCATCAAGTTCAGCCGAGGATGGCACAGCATGTCCCATTTGCCAGGCTACTCCAACCATTCCTTTTGTTGCTCTACCTTGTCAGCACAGATATTGTTACTACTGTCTTAGGACACGATGTGCTGCTGCTCCATCATTTAGGTGTTCCAGGTGCGGTGAGCCAGTTGTTGCTATGCAACGGCATGGCGGTGTCCCCGCAGAATGA 990 0.4364 MTLPPHDAWIHTSHNLLPRWKSLSLSHQSTIPISISRVNQVDAARLDVEMSAMLKEQLVKVFSLMKPGMLFQYEAELDAFLEFLIWRFSIWADKPTPGIALMNLRYRDERAVESRDKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFSAFRRWGDTEQRPLARRLWILIQRMEGIYRAASFGNLLIFLCTGRYRNLVERALRARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKNLLRPFSKDKSSSSAEDGTACPICQATPTIPFVALPCQHRYCYYCLRTRCAAAPSFRCSRCGEPVVAMQRHGGVPAE 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3337 329 CDD RING-HC_PEX2 272 314 - -
Ssu4g3337 329 Pfam Zinc finger, C3HC4 type (RING finger) 273 313 IPR018957 GO:0046872
Ssu4g3337 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 324 IPR013083 -
Ssu4g3337 329 Pfam Pex2 / Pex12 amino terminal region 47 251 IPR006845 -
Ssu4g3337 329 ProSitePatterns Zinc finger RING-type signature. 289 298 IPR017907 -
Ssu4g3337 329 SMART ring_2 273 313 IPR001841 -
Ssu4g3337 329 ProSiteProfiles Zinc finger RING-type profile. 273 313 IPR001841 -
Ssu4g3337 329 PANTHER - 3 326 - -
Ssu4g3337 329 SUPERFAMILY RING/U-box 267 319 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3337 K06664 - gmx:100805856 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3337 4 83770553 83775411 Ssu4g3337 4 83770553 83775411 ECH