Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3333 ATGGAATCGAGTCGAAGAGCGGTGGAATCGTACTGGCGATCGCGGTTGATCGATTCAGCTACGTCCGATGAAGATAAAGTCACGCCCGTTTACAAATTGGAGGAGATCTGCGAACTTTTGCGCTCTTCGCATGTTAGTATTGTGAAGGAGGTTTCAGAGTTTGTCTTAAAACGTTTGGAGCATAAAAGCCCAATTGTGAAACAGAAGGCTTTAAGATTGATAAAGTATGCTGTTGGGAAGTCTGGTGTGGAATTCAGAAGGGAAATGCAGAGACATTCAGTGGCGGTTCGTCAGTTGTTTCACTACAAGGGACAGTTGGATCCTTTGAAAGGTGATGCACTAAATAAGGCTGTGAGAGACACTGCTCATGAGGCTATCTCTGCCATATTTTCGGAAGACAATAATAAGCCAGCACCTGCTGAAGATCTAAACCGGCGGATACAAGGGTTTGGGAATACAAACTATGAAGCGCCGCCGGAAGATAAGAAGTCTTTTATCAGTGAGGTTGTTGGTATTGGAAGCGCGTCGATTAAGCAAGGACTTAATAGCTTGACACAGGGACATTCGCTAATGAAGAATAGTGATCCTGGAAACTACAAGAGTCCGAATCTTCGAAGGTCGTTGACCAATGAAACAGAACATGGTGACAGATATGAACCGGTTGCATATCGAAATGAAACTGAGAGTAGTTTTGGAGCATCAAAGAATCAATCTACTGGTCCTTGGAATCAGGATTCAAGAGTAACTAAGGTGGAAACATCAAATGGGGAATCTGGTGCAAGTTATTCAGAGAATAAGACAAGAGAGGATAGGTTGCTGGAGACAATTGTAACATCAGGAGGTGTTCGCCTGCAACCCACTCGAGATGCCATTCAAGTTTTCCTAACAGAGGCTGCGAAGTTGGATGCACTAGCTTTATGTCATGCCCTTGAACTAAAGCTCCAATCTCCAATTTGGCAGGCATGTCTGTTATGTTGA 978 0.4397 MESSRRAVESYWRSRLIDSATSDEDKVTPVYKLEEICELLRSSHVSIVKEVSEFVLKRLEHKSPIVKQKALRLIKYAVGKSGVEFRREMQRHSVAVRQLFHYKGQLDPLKGDALNKAVRDTAHEAISAIFSEDNNKPAPAEDLNRRIQGFGNTNYEAPPEDKKSFISEVVGIGSASIKQGLNSLTQGHSLMKNSDPGNYKSPNLRRSLTNETEHGDRYEPVAYRNETESSFGASKNQSTGPWNQDSRVTKVETSNGESGASYSENKTREDRLLETIVTSGGVRLQPTRDAIQVFLTEAAKLDALALCHALELKLQSPIWQACLLC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3333 325 Gene3D - 2 139 IPR008942 -
Ssu4g3333 325 MobiDBLite consensus disorder prediction 207 223 - -
Ssu4g3333 325 SMART VHS_2 13 147 IPR002014 GO:0035091|GO:0043130
Ssu4g3333 325 ProSiteProfiles VHS domain profile. 20 89 IPR002014 GO:0035091|GO:0043130
Ssu4g3333 325 CDD ENTH_like_Tepsin 13 132 IPR035802 -
Ssu4g3333 325 MobiDBLite consensus disorder prediction 186 206 - -
Ssu4g3333 325 Pfam ENTH domain 16 129 IPR013809 -
Ssu4g3333 325 SUPERFAMILY ENTH/VHS domain 15 135 IPR008942 -
Ssu4g3333 325 MobiDBLite consensus disorder prediction 186 266 - -
Ssu4g3333 325 MobiDBLite consensus disorder prediction 227 262 - -
Ssu4g3333 325 PANTHER UNCHARACTERIZED 1 323 IPR039273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3333 Ssu-Chr4 83730272 83731593 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3333 - - gmx:100803368 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3333 4 83730272 83731593 Ssu4g3333 4 83730272 83731593 ECH