Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3313 ATGGCCTCTTACAGGCCCTTCCCTCCTCCGCAATCGAGTCAAATTCAAAACCCTATCGCTGGTGGGAATCACCAGTATAATCAAAATTGGGGTGCTTATGGAGATCCCTCTACTTCTTCATTCCCCCAAATCCCTCCAAACTCCAATTATCaccatcatcaacaacaacaacaacaacaacaacatcatgtTCCATATGCACCTCCAAATCCCCATCACCCTCACTATCCAtatccaccaccacctcctccgCCGCCACCAGAGGCTCCATACCAGCCTCCaccgccgccgccaccacccCCTGCCATGTATTATCCTTCCAGTAATCAGTACAACAACCAGCCacctccgccgccgccgccgttGTCGCCACCGCCTCCACCTCCTCCTGTTTCACCCCCTCCTCCTCCCCCGGCAGCTCAGAACAACGAGGAGCGGCGATTCAAGGAGCCTACCACGTCTGGGCGGCGCGAATACGAGCCTCCCAACCACGGCATTGCTCACAAACAGCACAAGCAGCAGCCTCCCATGCCGGCAAAGAAGATGAATGGGCCTCCCGGAGGCAGGCCTGAGACTGAGGAAGAGAAGAGGTTGAGGAAAAAGAGGGAATTTGAGAAGCAGAGGCAGGAGGAAAAGCATAGGCAGCAGCTCAAGGAGTCACAGAACACTGTTCTGCAGAAGACTCACATGTTGTCCTCTGGGAAGGGGCACGGTTTGATTGCAGGGTCTCGAATGGGAGAAAGGAGGTCTACTCCCTTACTGAGTGCAGAGAGGGTTGAAAATAGGTTGAAGAAGCCCACAACGTTTTTGTGTAAGCTCAAATTCCGAAATGAACTTCCAGATCCAAGCGCACAACCTAAGCTTATGGCATTCAAGAAAGATAAAGACCAATATGCAAAATATACAATCACATCTCTGGAGAAAATGTACAAACCCAAGCTTTTTGTGGAGCCAGATCTAGGGATACCTCTGGACCTGCTTGATCTCAGTGTTTACAATCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATGAAGAATTGTTGCGAGATGATGAAGCTGCTACTCCTATAAAAAAGGATggcataaaaagaaaggagaggCCTACTGATAAAGGTGTAGCATGGCTTGTCAAAACACAATATATATCTCCTCTAAGCATGGAATCAACAAAGCAGTCTTTAACTGAGAAACAAGCCAAGGAGCTGAGAGAGATGAAGGGAGGCTGCAGCATTTTGGACAATCTTAACAGTAGGGAAAGACAAATCAGGGAAATTGAAGCATCGTTTGAAGCAGCTAAGTCTGATCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTATGCCATTGCTGCCCGATTTTGATAGGTATGATGATCAGTTTGTTGTTGCTGCGTTTGATAATGCTCCAACAGCTGATTCAGAAATGTATGCTAAGTTAGACAAATCTGTTCGTGATGCCTATGAATCAAAGGCAGTTATGAAAAGTTATGTTGCAACAAGTTCAGATCCTGCTAATCCTGAGAAGTTTTTGGCATACATGGCACCAGCACCCGGAGAGCTATCAAAGGATAtatatgatgaaaatgaagatgtCTCGTACTCTTGGATTCGCGAGTATCATTGGGATGTTCGGGGTGATGATGCCGATGACCCTACAACATTCTTAGTTTCATTTGATGAGTCAGAAGCACGTTACTTGCCTCTTCCAACTAaacttgttttaagaaaaaagagggCTAAAGAGGGAAGATCAGGTGATGAGGTTGAGCAATGTCCAGTACCTTCAAGAGTGACTGTAAGGCGGAGGTCTAGTGTTGCTGCGATTGAGCGGAAGGATTCTGGGGTTTATACAAGTTCAAAGGGAAATTCCTCAAAGAGAGGAGGTGATTTAGAAATGGATGATGGTCTCGAACACCAACATAGAGATGCAGCACACCAGGACAACTATCAGTCTAGTGGAGCAGAAGATTACATGTCTGATTGA 1995 0.4286 MASYRPFPPPQSSQIQNPIAGGNHQYNQNWGAYGDPSTSSFPQIPPNSNYHHHQQQQQQQQHHVPYAPPNPHHPHYPYPPPPPPPPPEAPYQPPPPPPPPPAMYYPSSNQYNNQPPPPPPPLSPPPPPPPVSPPPPPPAAQNNEERRFKEPTTSGRREYEPPNHGIAHKQHKQQPPMPAKKMNGPPGGRPETEEEKRLRKKREFEKQRQEEKHRQQLKESQNTVLQKTHMLSSGKGHGLIAGSRMGERRSTPLLSAERVENRLKKPTTFLCKLKFRNELPDPSAQPKLMAFKKDKDQYAKYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEELLRDDEAATPIKKDGIKRKERPTDKGVAWLVKTQYISPLSMESTKQSLTEKQAKELREMKGGCSILDNLNSRERQIREIEASFEAAKSDPVHATNKDLYPVEVMPLLPDFDRYDDQFVVAAFDNAPTADSEMYAKLDKSVRDAYESKAVMKSYVATSSDPANPEKFLAYMAPAPGELSKDIYDENEDVSYSWIREYHWDVRGDDADDPTTFLVSFDESEARYLPLPTKLVLRKKRAKEGRSGDEVEQCPVPSRVTVRRRSSVAAIERKDSGVYTSSKGNSSKRGGDLEMDDGLEHQHRDAAHQDNYQSSGAEDYMSD 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3313 664 MobiDBLite consensus disorder prediction 1 259 - -
Ssu4g3313 664 PANTHER RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG 124 662 IPR007133 GO:0006368|GO:0016570|GO:0016593
Ssu4g3313 664 MobiDBLite consensus disorder prediction 1 65 - -
Ssu4g3313 664 MobiDBLite consensus disorder prediction 581 664 - -
Ssu4g3313 664 MobiDBLite consensus disorder prediction 187 218 - -
Ssu4g3313 664 MobiDBLite consensus disorder prediction 650 664 - -
Ssu4g3313 664 PRINTS Proline rich extensin signature 62 83 - -
Ssu4g3313 664 PRINTS Proline rich extensin signature 83 99 - -
Ssu4g3313 664 PRINTS Proline rich extensin signature 117 142 - -
Ssu4g3313 664 MobiDBLite consensus disorder prediction 143 167 - -
Ssu4g3313 664 MobiDBLite consensus disorder prediction 630 649 - -
Ssu4g3313 664 MobiDBLite consensus disorder prediction 67 141 - -
Ssu4g3313 664 Coils Coil 416 436 - -
Ssu4g3313 664 SUPERFAMILY Formin homology 2 domain (FH2 domain) 120 266 - -
Ssu4g3313 664 Pfam Paf1 269 622 IPR007133 GO:0006368|GO:0016570|GO:0016593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3313 K15174 - gmx:100800148 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3313 4 83417205 83420859 Ssu4g3313 4 83417205 83420859 ECH