Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3309 ATGAGGAAGGTGGTGGTGGGTGCGACGGTGATCGGAGCTGCGACGGCGTGCGCGGTGGCGGTGCAGAGGTACGTGAGGAAATGTGGACGGTGGGGAAGGGCAATGGCGATATTGAAGGAGTTGGAGGAGAAGTGTGCGACACCGGCGTGGAAGCTGAAGCTGGTCGCCGATGCCATGAGCGTCGAGATGCACGCTGGCCTTGCTTCCGAAAGTGGTAGCAAGCTCAAGATGCTCATCACTTACGTTGATAATCTCCCAACAGGGAGTGAGGAAGGACTATATTATGCATTGGACCTTGGAGGGACTAATTTTCGCGTGTTACGTGTGCAACTGGGAGGCAAGGATGGTGGTATTATTAATCAAGAATTTACTGAGGTGTCAATTCCTTCTAATTTGATGGTCGGGACGTCTGAgGTGCTCTTTGACTATATTGCAGCAGAACTTGGAAAATTTGTTGCCCAAGAAAATCAAGATTTTCAAGTTCCTCCTGGTAGCAAGAGAGAGCTAGGTTTTACCTTTTCCTTTCCTGTCATGCAAACGTCAATTGCTTCTGGGAACCTTATCAGGTGGACAAAAGGCTTCAACATAGATGACACAGTTGGTCAAGATGTTGTGGCTGAATTAACAAAAGCCATTGAGAGACAAGGTCTTGATATGCGTGTAACAGCTCTGGTCAATGATACAGTTGGGACATTAGCAGGAGGTCGATACACAAACAGCAATGTCATTGCTGCTGTTATTTTAGGTACTGGAACAAATGCTGCCTACGTGGAGCGTGCTCAAGCAATACCAAAATGGCATGGTCCTTTGTCAAATTCTGGAGAAATGGTTATCAACATGGAGTGGGGAAACTTCCAGTCATCACACCTTCCATTAACTCAGTATGATTATGCATTAGATGCTGAGAGTTTAAACCCTGGTGAACAGATTTTTGAGAAGATAATTTCTGGCATGTACTTGGGAGAAATTGTTCGTAGAGTACTATGCAAAATGGCTGAAGAAGCTTGCTTTTTTGGTGACAATGTCCCCCCAAAGCTAAAAGTTCCGTTCATATTAAGGACACCTGACATGTCTGCGATGCATCATGACTCATCAGTTGATCTCAACGTGGTTAGAAGCAAACTGAAGAACATTTTGGAGatatcTGATACCTCGCTGGAAGTGAGGAAGGTGGTTGTTGAGATCTGCAATATTGTTGCTACCCGTGGTGCTCGTCTTTCTGCTGCTGGCATCTTGGGTATCCTGAAGAAGTTGGGAAAAGATACCATCAGTGATGGTGATGGTCAGAAGAATGTGATAGCTATGGATGGTGGATTGTATGAGCATTACACTGAGTATAGCAAGTGCCTAGAGAACACCCTTAATGAATTGATTGGTGAAGATGTCTCagaaaatattatcattgaGCATTCCAATGACGGTTCAGGAATTGGTGCAGCCCTTCTTGCTGCCTCTCACTCCCAGTCCCTTGATGGTTAA 1479 0.451 MRKVVVGATVIGAATACAVAVQRYVRKCGRWGRAMAILKELEEKCATPAWKLKLVADAMSVEMHAGLASESGSKLKMLITYVDNLPTGSEEGLYYALDLGGTNFRVLRVQLGGKDGGIINQEFTEVSIPSNLMVGTSEVLFDYIAAELGKFVAQENQDFQVPPGSKRELGFTFSFPVMQTSIASGNLIRWTKGFNIDDTVGQDVVAELTKAIERQGLDMRVTALVNDTVGTLAGGRYTNSNVIAAVILGTGTNAAYVERAQAIPKWHGPLSNSGEMVINMEWGNFQSSHLPLTQYDYALDAESLNPGEQIFEKIISGMYLGEIVRRVLCKMAEEACFFGDNVPPKLKVPFILRTPDMSAMHHDSSVDLNVVRSKLKNILEISDTSLEVRKVVVEICNIVATRGARLSAAGILGILKKLGKDTISDGDGQKNVIAMDGGLYEHYTEYSKCLENTLNELIGEDVSENIIIEHSNDGSGIGAALLAASHSQSLDG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3309 492 PRINTS Hexokinase family signature 221 237 - -
Ssu4g3309 492 PRINTS Hexokinase family signature 244 258 - -
Ssu4g3309 492 PRINTS Hexokinase family signature 169 194 - -
Ssu4g3309 492 PRINTS Hexokinase family signature 95 111 - -
Ssu4g3309 492 PRINTS Hexokinase family signature 392 414 - -
Ssu4g3309 492 PRINTS Hexokinase family signature 469 485 - -
Ssu4g3309 492 PRINTS Hexokinase family signature 309 331 - -
Ssu4g3309 492 CDD NBD_sugar-kinase_HSP70_actin 96 258 - -
Ssu4g3309 492 Gene3D - 80 483 - -
Ssu4g3309 492 Pfam Hexokinase 244 484 IPR022673 GO:0005524|GO:0005975|GO:0016773
Ssu4g3309 492 Pfam Hexokinase 38 237 IPR022672 GO:0005524|GO:0005975|GO:0016773
Ssu4g3309 492 Gene3D - 58 472 - -
Ssu4g3309 492 PANTHER HEXOKINASE 1 489 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Ssu4g3309 492 SUPERFAMILY Actin-like ATPase domain 242 488 IPR043129 -
Ssu4g3309 492 ProSiteProfiles Hexokinase domain profile. 32 484 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Ssu4g3309 492 SUPERFAMILY Actin-like ATPase domain 25 239 IPR043129 -
Ssu4g3309 492 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Ssu4g3309 492 PANTHER HEXOKINASE-1 1 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3309 Ssu-Chr4 83368676 83374627 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3309 K00844 - gmx:100783775 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3309 4 83368676 83374627 Ssu4g3309 4 83368676 83374627 ECH