Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3266 ATGATTGCAGTAAGTGTAAAATGGcaaaaagagcttttcaaagATGTAGAAATTGACACTACCCAGTCCCCTTATGTTTTTAAATGCCAACTGTATGATCTGACTGGTGTACTGCCtgaaagacaaaaaattatGGTCAAGGGTGGTCTTTTGAAGGATGATGCTGATTGGTCAACATTAGGAGTGAAAGAGGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGTCTCCAGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCTGAGGAAGAACAAGTAGTTGCTGTTGGACATACTGCTGGTCTTTTTAATTTGGGAAATACATGTTATATGAACTCAACATTGCAATGCCTCCATTCCGTGCCTGAGTTAAAGTCGGCTTTGATTAAGTACTCACATTCAGGACGAAACAATGATGTTGATCAGTCTTCTCATATGTTGACCATTGCAACCCGTGACTTATTCAATGAGCTTGATAAGAGTGTCAAGCCTGTGGCACCAATGCAATTTTGGATGGTATTGCGGAAAAAATATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGTTGGACACAACTTCTATACACACTCTCTCAGTCCCTCAGATCCCCTGGATCTAGTGAAAATCTTGATGCTGTGAAGGCCCTCTTTGGCATAGAACTTATTAGCAGGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCGGAAACAGAGTCTGTTTATTCACTGAAATGCCACATATCGCACGAGGTGAACCATTTGCATGAAGGGCTAAAACATGGGTTAAAATCAGAGTTAGAAAAGGCTTCTCCTGCATTGGGCCGTAGTGCTACCTACTTGAAGGAATCACGCATCAATGCCCTGCCAAGGTACTTGACTATTCAGTTTGTCCGTTTCTTTTGGAAGAGGGAATCCAACCAGAAGGCTAAGATTTTGCGGAAAGTGGATTATCCTCTGGAGTTGGATGTTTATGATTTTTGTTCAGACGATCTTCGTAAAAAATTGGAAGCTCCTAGACAGATCCTAAGAAACGAGGAAGGCAAAAAGCTTGGTCTGAAAGTGAATGAGAAAAGCTCTGTCCAGAAGGAAAATGATGTAAAAATGTCTGATGCTGAGGGATCATCGAATGGAGGAGGGAAGCCATCTGTAGTTCCCATGGAGGAGGGTGAAAAGGAAACACAGATGACTGGAATTTATGATTTGGTTGCTGTATTAACCCACAAGGGTAGAAGTGCTGATTCGGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGGAAATGGATAGAGTTTGATGATGACAATCCCAAACCAAAAGTAGAAGAAGACATCACTAGACTATCTGGAGGAGGTGATTGGCATATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCTGTGTAA 1443 0.4075 MIAVSVKWQKELFKDVEIDTTQSPYVFKCQLYDLTGVLPERQKIMVKGGLLKDDADWSTLGVKEGQKLMMMGTADEVVKSPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPELKSALIKYSHSGRNNDVDQSSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENLDAVKALFGIELISRIHCQESNEESSETESVYSLKCHISHEVNHLHEGLKHGLKSELEKASPALGRSATYLKESRINALPRYLTIQFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDDLRKKLEAPRQILRNEEGKKLGLKVNEKSSVQKENDVKMSDAEGSSNGGGKPSVVPMEEGEKETQMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPKVEEDITRLSGGGDWHMAYIIMYKARVVSV 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3266 480 Gene3D Cysteine proteinases 98 479 - -
Ssu4g3266 480 SMART ubq_7 2 73 IPR000626 GO:0005515
Ssu4g3266 480 SUPERFAMILY Cysteine proteinases 102 474 IPR038765 -
Ssu4g3266 480 Pfam Ubiquitin carboxyl-terminal hydrolase 105 473 IPR001394 GO:0004843|GO:0016579
Ssu4g3266 480 MobiDBLite consensus disorder prediction 365 396 - -
Ssu4g3266 480 Pfam Ubiquitin family 15 73 IPR000626 GO:0005515
Ssu4g3266 480 MobiDBLite consensus disorder prediction 365 381 - -
Ssu4g3266 480 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 105 120 IPR018200 GO:0004843|GO:0006511
Ssu4g3266 480 Gene3D - 1 73 - -
Ssu4g3266 480 CDD Peptidase_C19A 105 474 - -
Ssu4g3266 480 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 479 IPR044635 GO:0004843|GO:0016579|GO:0043161
Ssu4g3266 480 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Ssu4g3266 480 CDD Ubl_USP14_like 1 75 - -
Ssu4g3266 480 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 104 476 IPR028889 -
Ssu4g3266 480 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 411 429 IPR018200 GO:0004843|GO:0006511
Ssu4g3266 480 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 479 - -
Ssu4g3266 480 ProSiteProfiles Ubiquitin domain profile. 2 71 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3266 Ssu-Chr4 82323829 82334989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3266 104 473 Miscellaneous Gene Families AT2G24640 21.392 8.65e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3266 K11843 - gmx:100802120 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3266 4 82323829 82334989 Ssu4g3266 4 82323829 82334989 ECH