Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3250 ATGGCTCAGCAGCCGTTCGACCCGTACTACCTGTACCAACAAGACGAGCGGAGCAGCATCAACACGCTTTTCGTGTCGGGGCTCCCCGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCTGGCTTTGACTCTTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTAGCGTTTGCCACGTTTTTCAACCACCAATCAGCAATGGCAGCGTTGCACGCCTTAAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGTAAAccagGTGGTGGAGCCTATGTGGTTATAGATAAAAGGTCCAAAGGGGAGCCTGATGTTCAGGGTTCATCAAGTGATGATGGTGACAGTGACCCTGATGAACCATCAGAAAGTGACGGCAACCACGGTGATTTAGCAACCATGCAAAGTGGTGAAACTGCTGTTGGTTCTGACAATGCCGTACCTGTGGAGCAATATGAAAAGGGCAGTGACGGAGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGTCCAACCTGCACTGAAGATGAATTGAAGCAGGCCTTTTCTGTATATCCTGGATTCAACATGGTCAAAATGCGCTCTAGAGGAGGAATGCCTGTTGCATTTACTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCATGGAGGAGCTTCAGGGCAACTTGCTGCCATCGTCAGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAAAATGAGGAAGCATTAG 795 0.4918 MAQQPFDPYYLYQQDERSSINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRSKGEPDVQGSSSDDGDSDPDEPSESDGNHGDLATMQSGETAVGSDNAVPVEQYEKGSDGGLCSTLFIANLGPTCTEDELKQAFSVYPGFNMVKMRSRGGMPVAFTDFEEIDQAAKVMEELQGNLLPSSDRGGMHIEYARSKMRKH 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3250 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Ssu4g3250 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Ssu4g3250 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 253 - -
Ssu4g3250 264 SUPERFAMILY RNA-binding domain, RBD 21 243 IPR035979 GO:0003676
Ssu4g3250 264 CDD RRM_scw1_like 181 258 - -
Ssu4g3250 264 CDD RRM_RBPMS_like 21 96 - -
Ssu4g3250 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Ssu4g3250 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Ssu4g3250 264 MobiDBLite consensus disorder prediction 101 155 - -
Ssu4g3250 264 Gene3D - 16 103 IPR012677 -
Ssu4g3250 264 Gene3D - 180 264 IPR012677 -
Ssu4g3250 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Ssu4g3250 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Ssu4g3250 264 PANTHER RNA-BINDING PROTEIN-RELATED 11 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3250 Ssu-Chr4 82040396 82044065 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3250 - - gmx:100783764 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3250 4 82040396 82044065 Ssu4g3250 4 82040396 82044065 ECH