Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3247 ATGAATTATGATTGGTGTCAGAGATCGAGCTTGACGTTTGGAGAGACGTTGTGCGCGGTGTTCATCCCGCTTATAGGAATAGTCGAAGCTATTGTTTACAGCTTAACTGGTTGCTTCGATGTTCAATCTCCGAAGAAGAAGAAACCCTCTTCTACCTTCGACGATATTCTCACCCTCGCCAAGGACTCTCCATTTATTGTTAATGAAATTGAGGCGTTGCATGGGTTGTTCAAGAAGTTGAGTAGTTCAATTATTGATGATGGCCTCATCCACAAGGTAGCTAGCTTCCTCACATTGGCACTGTTGAAGACCTCAACTGGCGAGAATCTTTTCCTTGGCACGGTGTTTGATCTCTTTGATGAAAAAAGAAACGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTATCTTTCATCCTTGTACTCCTctggaaaagaaaattgattgtaAGACTTCAGTAAGAgtttttcatttgtatttttatattatctattttatttctgttagtattaataaaaaatgtcaatattcTTTTATTGGTTTGCTTGTAGTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGCGAGAAGAAGTGAGTATCTTGGCATGTCCaggttatgaaaaatgttattga 651 0.3456 MNYDWCQRSSLTFGETLCAVFIPLIGIVEAIVYSLTGCFDVQSPKKKKPSSTFDDILTLAKDSPFIVNEIEALHGLFKKLSSSIIDDGLIHKVASFLTLALLKTSTGENLFLGTVFDLFDEKRNGVIEFEEFVHALSIFHPCTPLEKKIDCKTSVRVFHLYFYIIYFISVSINKKCQYSFIGLLVVAFRLYDLRQTGYIEREEVSILACPGYEKCY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3247 216 PANTHER CALCINEURIN B 186 205 IPR045198 GO:0005509|GO:0019722|GO:0019900
Ssu4g3247 216 Gene3D - 56 210 - -
Ssu4g3247 216 PANTHER CALCINEURIN B 6 152 IPR045198 GO:0005509|GO:0019722|GO:0019900
Ssu4g3247 216 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 6 152 - -
Ssu4g3247 216 ProSiteProfiles EF-hand calcium-binding domain profile. 107 142 IPR002048 GO:0005509
Ssu4g3247 216 SUPERFAMILY EF-hand 61 207 IPR011992 -
Ssu4g3247 216 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 186 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3247 Ssu-Chr4 81997509 82000155 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g3247 9 205 EF-hand Containing Proteins AT4G33000 50.254 5.73e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3247 K06268 - gmx:100801943 251.136