Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g3236 ATGTATCGATTAGCTCGTAGAGTAGCTTCCTCCATTGGTTCTCCTCCCTCCGCTAAGAACCTCGTATATGGTTATGGTGGGGTATTGTCAAGCAGAAATTATGTGACCAAAGATATCAACTTCGGGGTTGGGGCTCGTGCTGCCATCCTCCAGGGTGTGACTGAGGTTGCTAACGCTGTCAAAGTTACCATGGGACCCaagGGCCGCAATGTGATAATTGAGAGAAGTCATGGGAATCCCAGGATCACCAAGGATGGTGTGACTGTGGCCAAAAGTATCAAATTCAAAGACAATGCCAAAAATGTTGGTGCGGATCTCGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCCGGCGTAAATGTTATGGATTTACGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGAGTTGAAAAGCAGAGCATTAATGATAAGTACACCCGAAGAGATAACCCAGGTTGGAACTATATCTGCGAATGGGGAGCGTGATATTGGAGAATTGATAGCCAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATTACTGTTGCTGATGGGAATACTATGGATAATGAGTTGGAAGTGGTAGAAGGAATGAAGTTAAGCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCGGAAATGTGAATTGGAGAACCCCTTTATTCTCATTCATGACAAGAAAATTTCGGACATGAATTCGCTGCTGAAAATACTGGAGCTGGCAGTAACGAAAAAAAGACCACTCCTAGTTGTCGCTGAAGATGTTGAGAGTGATGCATTGGCTATGCTCATACTCAACAAGCATCATGCTGGGCTTAAGGTTTGTGCTGTAAAAGCTCCTGGTTTTGGGGATAATAGAAGAGCAAATCTAGATGATCTTGCAATTCTTACTGGAGGAGAGGTCATCACAGAAGAGCGCGGTTTGTCTCTAGATAAAGTTCAACTGGAAATGCTTGGCACTGCAAAAAAGGTTACTGTCACCATTGATGACACTATTATTCTACATGGTGGTGGGGATAAGAAGCTCATTGAAGAGAGATGTGAACagCTGAGGACAGCCATGGAAAAGAGTTCTGCCATGTTTGATAAAGAAAAGACACAGGAACGCCTATCAAAACTATCTGGTGGTGTAGCTGTTTTCAAAGTTGGGGGGGCTAGTGAGGCCGAAGTTGGGGAAAGGAAAGATAGAGTAACAGATGCTTTAAATGCCACTAGAGCAGCTGTGGAAGAGGGAATTCTTCctgGTGGTGGAGTTGCTCTCTTATATGCTTTCAAAGTCTTGGATaatcttcaaactcaaaatGAAGATGAGAAAAGAGGAGTACAGATTATTCAGAATGCACTCAAGGCACCTACGTTTACAATAGCTTCAAATGCTGGTTTTGATGGTGCTTTGGTCCACAGCAAATTGTTGGAACAAGATGATCATAATTTAGGTTTTGATGCTGCTAAAGGTGTCTATGTTGATATGGTAAAGGCTGGAATAATAGATCCTCTTAAAGTTGTTAGAACAGCTTTGGTAGATGCTGCCAGTGTGTCATTGCTACTGACAACAACCGAGGCAGCTGTGGTGGATAATCCGCATGACAAAAATAAACCTGCAAGTCGGGTGCCAGATATGGATGATTTGGACCTCTAA 1734 0.4273 MYRLARRVASSIGSPPSAKNLVYGYGGVLSSRNYVTKDINFGVGARAAILQGVTEVANAVKVTMGPKGRNVIIERSHGNPRITKDGVTVAKSIKFKDNAKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITELKSRALMISTPEEITQVGTISANGERDIGELIARAMEKVGKEGVITVADGNTMDNELEVVEGMKLSRGYISPYFITDQKTRKCELENPFILIHDKKISDMNSLLKILELAVTKKRPLLVVAEDVESDALAMLILNKHHAGLKVCAVKAPGFGDNRRANLDDLAILTGGEVITEERGLSLDKVQLEMLGTAKKVTVTIDDTIILHGGGDKKLIEERCEQLRTAMEKSSAMFDKEKTQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGILPGGGVALLYAFKVLDNLQTQNEDEKRGVQIIQNALKAPTFTIASNAGFDGALVHSKLLEQDDHNLGFDAAKGVYVDMVKAGIIDPLKVVRTALVDAASVSLLLTTTEAAVVDNPHDKNKPASRVPDMDDLDL 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g3236 577 Coils Coil 459 479 - -
Ssu4g3236 577 ProSitePatterns Chaperonins cpn60 signature. 438 449 IPR018370 GO:0005524|GO:0006457
Ssu4g3236 577 PRINTS 60kDa chaperonin signature 301 324 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 PRINTS 60kDa chaperonin signature 60 86 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 PRINTS 60kDa chaperonin signature 116 143 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 PRINTS 60kDa chaperonin signature 431 452 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 PRINTS 60kDa chaperonin signature 383 408 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 SUPERFAMILY GroEL equatorial domain-like 40 555 IPR027413 -
Ssu4g3236 577 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 21 567 - -
Ssu4g3236 577 CDD GroEL 37 557 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 Gene3D GroEL 225 406 IPR027409 -
Ssu4g3236 577 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 21 567 - -
Ssu4g3236 577 TIGRFAM GroEL: chaperonin GroL 37 560 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 Gene3D - 170 443 IPR027410 -
Ssu4g3236 577 Gene3D - 39 556 IPR027413 -
Ssu4g3236 577 Hamap Chaperonin GroEL [groEL]. 35 575 IPR001844 GO:0042026|GO:0140662
Ssu4g3236 577 Pfam TCP-1/cpn60 chaperonin family 56 557 IPR002423 GO:0005524
Ssu4g3236 577 SUPERFAMILY GroEL apical domain-like 217 409 IPR027409 -
Ssu4g3236 577 SUPERFAMILY GroEL-intermediate domain like 171 237 IPR027410 -
Ssu4g3236 577 MobiDBLite consensus disorder prediction 557 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g3236 Ssu-Chr4 81734097 81740283 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g3236 K04077 - gmx:100778935 1036.17